Factsheet for Zm00001d008233_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018043_P001
Zm00001d027359_P001
Zm00001d028143_P002
Zm00001d028517_P001
Zm00001d035130_P001
Zm00001d048502_P002
Zm00001d049652_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	Zm00001d018043_P001	AT1G26830.1	12615944
AT2G26990.1	Zm00001d027359_P001	AT3G61140.1	11854419
AT2G26990.1	Zm00001d048502_P002	AT3G61140.1	11854419
AT2G26990.1	Zm00001d027359_P001	AT3G61140.1	12615944
AT2G26990.1	Zm00001d048502_P002	AT3G61140.1	12615944
AT2G26990.1	Zm00001d028517_P001	AT5G14250.1	12615944
AT2G26990.1	Zm00001d035130_P001	AT5G14250.1	12615944
AT2G26990.1	Zm00001d049652_P001	AT5G14250.1	12615944
AT2G26990.1	Zm00001d028143_P002	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02774	Sorghum	cytosol	93.53	98.86
Os01t0279200-02	Rice	plasma membrane	90.95	96.13
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	92.46	95.33
HORVU3Hr1G039980.8	Barley	nucleus	90.09	95.22
TraesCS3A01G191800.1	Wheat	golgi, unclear	90.09	95.22
TraesCS3D01G194400.1	Wheat	nucleus	90.09	95.22
TraesCS3B01G219800.1	Wheat	cytosol	89.87	94.99
VIT_08s0040g00430.t01	Wine grape	cytosol	85.78	90.45
KRH64921	Soybean	nucleus	85.34	90.2
Solyc11g062430.1.1	Tomato	cytosol	84.7	89.52
PGSC0003DMT400082384	Potato	cytosol	84.27	89.07
Solyc01g008840.2.1	Tomato	cytosol	84.27	89.07
KRH57710	Soybean	nucleus	83.19	87.93
KRG94272	Soybean	nucleus	82.76	87.47
KRG94968	Soybean	cytosol	84.48	87.11
PGSC0003DMT400072227	Potato	nucleus	82.33	87.02
Solyc10g081150.1.1	Tomato	nucleus	82.11	86.79
CDY38538	Canola	cytosol	78.88	83.37
Bra000529.1-P	Field mustard	cytosol	78.45	82.92
CDX83249	Canola	cytosol	78.23	82.88
CDX71478	Canola	cytosol	77.8	82.23
AT2G26990.1	Thale cress	cytosol	77.59	82.0
CDY04472	Canola	cytosol	77.37	81.78
PGSC0003DMT400058484	Potato	cytosol	83.84	81.38
GSMUA_Achr6P08520_001	Banana	cytosol	33.19	80.63
Bra012038.1-P	Field mustard	nucleus	76.72	41.69
Zm00001d041456_P001	Maize	extracellular	18.75	20.42
Zm00001d003566_P001	Maize	plasma membrane	18.75	20.14
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	18.53	19.91

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:103634653	MapMan:19.2.3.3.1.2	UniProt:A0A1D6FB18	ProteinID:AQK89246.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008180	InterPro:IPR000717	InterPro:PCI_dom
PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678	PANTHER:PTHR10678:SF3	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	UniParc:UPI00084235B8	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d008233	EnsemblPlants:Zm00001d008233_P001	EnsemblPlants:Zm00001d008233_T001

Description

COP9 signalosome complex subunit 2

Coordinates

chr8:+:2062566..2071530

Molecular Weight (calculated)

54400.4 Da

IEP (calculated)

5.641

GRAVY (calculated)

-0.580

Length

464 amino acids

Sequence
(BLAST)

001: MGSDADMEDY GFEYSDEEPE EQDVDIENQY YNSKGLVETD PEGALAGFDQ VVSMEPEKAE WGFKALKQTV KLYYKLGKYK EMMDAYREML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN FSLLQEFYQT TLKALEEAKN ERLWFKTNLK LCKIWFDMGE YGRMSKILKE LHKSCQREDG SDDQKKGTQL LEVYAIEIQM
201: YTETKNNKKL KPWILKSDVS CSYLIALFHH TIELLLQELY QRALSIKSAI PHPRIMGIIR ECGGKMHMAE RQWDEAATDF FEAFKNYDEA GNPRRIQCLK
301: YLVLANMLME SEVNPFDGQE AKPYKNDSEI LAMTNLIAAY QKNDIMEFEK ILKSNRRTIM DDPFIRNYIE DLLKNIRTQV LLKLIKPYTR IRIPFISQEL
401: NFPEKDVEQL LVSLILDNRI QGHIDQVNKL LERGERSKGM RKYNAIDKWN TQLKSIYQTL SNRV

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.