CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92695
EER92981
EES05529
EES13281

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	EES05529	AT1G26830.1	12615944
AT2G26990.1	EER92981	AT3G61140.1	11854419
AT2G26990.1	EER92981	AT3G61140.1	12615944
AT2G26990.1	EES13281	AT5G14250.1	12615944
AT2G26990.1	EER92695	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0279200-02	Rice	plasma membrane	96.81	96.81
HORVU3Hr1G039980.8	Barley	nucleus	95.9	95.9
TraesCS3A01G191800.1	Wheat	golgi, unclear	95.9	95.9
TraesCS3D01G194400.1	Wheat	nucleus	95.9	95.9
TraesCS3B01G219800.1	Wheat	cytosol	95.67	95.67
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	97.72	95.33
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	98.86	93.53
VIT_08s0040g00430.t01	Wine grape	cytosol	91.34	91.14
KRH64921	Soybean	nucleus	90.89	90.89
Solyc11g062430.1.1	Tomato	cytosol	89.98	89.98
Solyc01g008840.2.1	Tomato	cytosol	89.52	89.52
PGSC0003DMT400082384	Potato	cytosol	89.52	89.52
KRH57710	Soybean	nucleus	88.38	88.38
KRG94272	Soybean	nucleus	87.93	87.93
KRG94968	Soybean	cytosol	89.98	87.78
PGSC0003DMT400072227	Potato	nucleus	87.7	87.7
Solyc10g081150.1.1	Tomato	nucleus	87.47	87.47
CDY38538	Canola	cytosol	83.83	83.83
Bra000529.1-P	Field mustard	cytosol	83.37	83.37
CDX83249	Canola	cytosol	83.14	83.33
CDX71478	Canola	cytosol	82.69	82.69
CDY04472	Canola	cytosol	82.23	82.23
AT2G26990.1	Thale cress	cytosol	82.23	82.23
PGSC0003DMT400058484	Potato	cytosol	89.07	81.8
GSMUA_Achr6P08520_001	Banana	cytosol	35.31	81.15
Bra012038.1-P	Field mustard	nucleus	81.55	41.92
OQU81648	Sorghum	nucleus	20.05	20.66
EES17355	Sorghum	plastid	19.82	20.42

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.2	EntrezGene:8074543	UniProt:C5XHA8	EnsemblPlants:EES02774	ProteinID:EES02774
ProteinID:EES02774.1	GO:GO:0000338	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0045892	InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF3	SMART:SM00088	SMART:SM00753	EnsemblPlantsGene:SORBI_3003G132000	SUPFAM:SSF46785	unigene:Sbi.2120
UniParc:UPI0001A84F7B	InterPro:WH_DNA-bd_sf	RefSeq:XP_002457654.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:12394544..12400362

Molecular Weight (calculated)

51387.7 Da

IEP (calculated)

5.680

GRAVY (calculated)

-0.643

Length

439 amino acids

Sequence
(BLAST)

001: MGSDADMEDY GFEYSDEEPE EQDVDIENQY YNSKGLVETD PEGALAGFDQ VVTMEPEKAE WGFKALKQTV KLYYKLGKYK EMMDAYREML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN FSLLQEFYQT TLKALEEAKN ERLWFKTNLK LCKIWFDMGE YGRMSKILKE LHKSCQREDG SDDQKKGTQL LEVYAIEIQM
201: YTETKNNKKL KELYQRALSI KSAIPHPRIM GIIRECGGKM HMAERQWAEA ATDFFEAFKN YDEAGNPRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQKNDIM EFEKILKSNR RTIMDDPFIR NYIEDLLKNI RTQVLLKLIK PYTRIRIPFI SQELNFPEKD VEQLLVSLIL DNRIQGHIDQ
401: VNKLLERGER SKGMRKYSAI DKWNTQLKSI YQTLSNRVG

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.