CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92695
EER92981
EER93338
EER95129
EER97436
EES00131
EES01769
EES02774
EES04173
EES13281
EES14305
EES18318
KXG27287
KXG36255
OQU81583

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42970.1	KXG36255	AT1G02090.1	11742986
AT5G42970.1	KXG36255	AT1G02090.1	11854419
AT5G42970.1	KXG36255	AT1G02090.1	12615944
AT5G42970.1	KXG27287	AT1G22920.1	12615944
AT5G42970.1	EES00131	AT1G64280.1	19490895
AT5G42970.1	KXG27287	AT1G71230.1	11742986
AT5G42970.1	EES02774	AT2G26990.1	12615944
AT5G42970.1	EER95129	AT2G39940.1	12724535
AT5G42970.1	EES01769	AT2G39940.1	12724535
AT5G42970.1	EES18318	AT2G39940.1	12724535
AT5G42970.1	EER97436	AT3G13550.1	11877375
AT5G42970.1	EER92981	AT3G61140.1	11854419
AT5G42970.1	EER92981	AT3G61140.1	12615944
AT5G42970.1	EES04173	AT4G02570.1	12724535
AT5G42970.1	OQU81583	AT4G14110.1	11854419
AT5G42970.1	OQU81583	AT4G14110.1	12615944
AT5G42970.1	EES13281	AT5G14250.1	11742986
AT5G42970.1	EES13281	AT5G14250.1	12615944
AT5G42970.1	EES13281	AT5G14250.1	12724535
AT5G42970.1	EER92695	AT5G42970.1	12615944
AT5G42970.1	EER93338	AT5G46210.1	16844902
AT5G42970.1	EES14305	AT5G56280.1	11701877
AT5G42970.1	EES14305	AT5G56280.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0197400-01	Rice	cytosol, nucleus, plastid	95.74	95.74
TraesCS4D01G262700.1	Wheat	cytosol, nucleus, plastid	94.99	94.99
TraesCS4B01G262600.1	Wheat	golgi	94.99	94.99
HORVU4Hr1G070980.1	Barley	cytosol	94.99	94.99
TraesCS4A01G041600.1	Wheat	cytosol, nucleus, plastid	94.49	94.49
Zm00001d028143_P002	Maize	cytosol, nucleus, plastid	99.5	90.43
GSMUA_Achr9P19410_001	Banana	cytosol	89.72	89.72
GSMUA_Achr8P31220_001	Banana	cytosol	82.71	86.39
VIT_18s0001g12250.t01	Wine grape	cytosol	85.71	86.15
KRH23810	Soybean	cytosol	84.96	85.39
Solyc04g080160.2.1	Tomato	cytosol	84.96	85.39
KRH39972	Soybean	cytosol	84.96	85.39
PGSC0003DMT400013225	Potato	cytosol	84.71	85.14
AT5G42970.1	Thale cress	cytosol	83.46	83.88
CDY22374	Canola	cytosol	82.21	82.62
CDX71533	Canola	cytosol	82.21	82.62
Bra033654.1-P	Field mustard	cytosol	82.21	82.62
CDY02426	Canola	cytosol	81.7	82.12
Bra035336.1-P	Field mustard	cytosol	81.7	82.12
CDY61016	Canola	cytosol	81.45	81.86
VIT_12s0035g01450.t01	Wine grape	mitochondrion	33.33	76.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:19.2.3.3.1.4	EntrezGene:8054249	UniProt:C5WUN5	InterPro:CSN4	EnsemblPlants:EER92695
ProteinID:EER92695	ProteinID:EER92695.1	GO:GO:0000338	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987	GO:GO:0010971
GO:GO:0016787	GO:GO:0019538	GO:GO:0019784	GO:GO:0043234	InterPro:IPR000717	InterPro:IPR036388
InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10855	PANTHER:PTHR10855:SF2	SMART:SM00088
SMART:SM00753	EnsemblPlantsGene:SORBI_3001G469200	SUPFAM:SSF46785	unigene:Sbi.2459	UniParc:UPI0001A8294B	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_002465697.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:74209968..74215547

Molecular Weight (calculated)

45174.0 Da

IEP (calculated)

4.781

GRAVY (calculated)

-0.263

Length

399 amino acids

Sequence
(BLAST)

001: MDSSLASAAA IADQRQKIEQ YRHILASVLS SSPPDISQAK RFLDHMVSDE VPLVVSRQLL QTFAQDLGKL ESDAQKEVAH YALTQIQPRV VSFEEQVVVI
101: REKLAELYES EQQWSKAAQM LSGIDLDSGI RMLDDTNKLS KCVQIARLYL EDDDAVNAEA FINKASFLVT NSHQEVLNLQ YKVCYARILD LKRRFLEAAL
201: RYYDISQIEQ RKIGDEEIDE NALEQALSAA VTCTILAGAG PQRSRVLATL YKDERCSKLK IYPILQKVYL ERILRKPEID AFAEELRPHQ KALLPDRSTV
301: LDRAMIEHNL LSASKLYTNI SFDELGTLLG IDPRKAEKIA SRMIYEDRMR GSIDQVEAVI HFDDDTEELQ QWDQQIAGLC QALNDILDSM SSKGIAIPV

Best Arabidopsis Sequence Match ( AT5G42970.1 )
(BLAST)

001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV

Arabidopsis Description

CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.