CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92695
EES13281
EES14305
KXG27287
KXG36255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	KXG36255	AT1G02090.1	11742986
AT4G26430.1	KXG36255	AT1G02090.1	21798944
AT4G26430.1	KXG27287	AT1G22920.1	11742986
AT4G26430.1	KXG27287	AT1G71230.1	11742986
AT5G56280.1	KXG36255	AT1G02090.1	11701877
AT5G56280.1	KXG36255	AT1G02090.1	11742986
AT5G56280.1	KXG36255	AT1G02090.1	12615944
AT5G56280.1	KXG27287	AT1G22920.1	11701877
AT5G56280.1	KXG27287	AT1G22920.1	11742986
AT5G56280.1	KXG27287	AT1G22920.1	12615944
AT5G56280.1	KXG27287	AT1G22920.1	21798944
AT5G56280.1	KXG27287	AT1G71230.1	11742986
AT5G56280.1	EES13281	AT5G14250.1	11701877
AT5G56280.1	EES13281	AT5G14250.1	12615944
AT5G56280.1	EER92695	AT5G42970.1	11701877
AT5G56280.1	EER92695	AT5G42970.1	12615944
AT5G56280.1	EES14305	AT5G56280.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031323_P001	Maize	extracellular	88.25	88.25
Os08t0500000-01	Rice	plasma membrane	85.84	86.63
TraesCS7D01G240300.1	Wheat	golgi, unclear	81.02	79.82
TraesCS7A01G241300.1	Wheat	plastid	81.02	79.82
HORVU7Hr1G049190.1	Barley	plastid	80.72	79.53
TraesCS7B01G136800.1	Wheat	plastid	80.12	78.93
GSMUA_Achr5P04140_001	Banana	plastid	73.19	78.64
VIT_19s0015g01950.t01	Wine grape	plastid	74.1	77.6
CDY32798	Canola	plastid	72.59	76.75
PGSC0003DMT400029338	Potato	plastid	71.39	76.21
Bra002827.1-P	Field mustard	plastid	71.69	75.8
AT5G56280.1	Thale cress	plastid	72.29	75.71
CDY49389	Canola	plastid	72.29	75.47
Solyc10g005660.2.1	Tomato	plastid	70.78	75.08
KRH62556	Soybean	plastid	71.39	74.53
AT4G26430.1	Thale cress	plastid	69.88	73.19
PGSC0003DMT400056930	Potato	cytosol, plastid	25.3	73.04
CDX89337	Canola	plastid	69.58	72.64
Bra026439.1-P	Field mustard	plastid	69.58	72.64
KRH56376	Soybean	plastid	70.18	72.36
CDX94336	Canola	plastid	68.67	71.7
Bra019106.1-P	Field mustard	plastid	67.47	70.44
CDY42737	Canola	plastid	67.47	70.44
CDX92773	Canola	plastid	64.46	60.8
EES11600	Sorghum	cytosol	20.18	21.61
KXG22419	Sorghum	plastid	18.67	21.6

Protein Annotations

MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	EntrezGene:8067010	UniProt:C5YJ86	EnsemblPlants:EES14305	ProteinID:EES14305
ProteinID:EES14305.1	GO:GO:0000338	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008180	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN
InterPro:MPN_CSN6	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF8
InterPro:Rpn11/EIF3F_C	SMART:SM00232	EnsemblPlantsGene:SORBI_3007G217400	unigene:Sbi.8239	UniParc:UPI0001A87F2A	RefSeq:XP_002444810.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:64562356..64565944

Molecular Weight (calculated)

36258.2 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.097

Length

332 amino acids

Sequence
(BLAST)

001: MSAPSDAAAA VAAPAPTTTA AASSSGGFTF KLHPLVIVNV SDHHTRVKAQ AACSGDSSSS SSAAGSGQPP RVFGCVIGVQ RGRTVEIFNS FELVLDPVSG
101: TLDRAFLEKK QELYKKVFPD FYVLGWYSTG SDVHETDMQI HKALMDVNES PVYLLLNPTI NLSQKDLPVT IYESELHVID GSPQLIFVRS NYTIETVEAE
201: RISVDHVAHL KPSDGGSAAT QLAAHLTGIH SAIKMLNSRV RVIHQYLVAM QKGDIPVDNS LLRQVSSLVR RLPAMESQKF QDDFLMEYND TLLMTYLAMF
301: TNCSSTMNEL VEKINTSYER PTARRGGRGA FM

Best Arabidopsis Sequence Match ( AT5G56280.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM

Arabidopsis Description

CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.