Factsheet for PGSC0003DMT400029338

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005660.2.1	Tomato	plastid	96.14	95.53
VIT_19s0015g01950.t01	Wine grape	plastid	89.07	87.38
PGSC0003DMT400056930	Potato	cytosol, plastid	30.87	83.48
GSMUA_Achr5P04140_001	Banana	plastid	81.35	81.88
KRH56376	Soybean	plastid	83.92	81.06
KRH62556	Soybean	plastid	82.32	80.5
Os08t0500000-01	Rice	plasma membrane	75.56	71.43
EES14305	Sorghum	plastid	76.21	71.39
TraesCS7A01G241300.1	Wheat	plastid	76.53	70.62
TraesCS7D01G240300.1	Wheat	golgi, unclear	76.53	70.62
HORVU7Hr1G049190.1	Barley	plastid	76.21	70.33
TraesCS7B01G136800.1	Wheat	plastid	75.88	70.03
Zm00001d031323_P001	Maize	extracellular	74.6	69.88
Zm00001d052848_P004	Maize	plastid	75.56	68.92
PGSC0003DMT400069899	Potato	cytosol	20.9	22.81
PGSC0003DMT400042160	Potato	cytosol	21.54	21.61
PGSC0003DMT400071416	Potato	cytosol	19.61	21.11

Protein Annotations

EntrezGene:102584188	MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	GO:GO:0000338	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037518
InterPro:JAMM/MPN+_dom	UniProt:M1ASL9	MEROPS:M67.972	InterPro:MPN	InterPro:MPN_CSN6	PFAM:PF01398
PFAM:PF13012	EnsemblPlantsGene:PGSC0003DMG400011272	PGSC:PGSC0003DMG400011272	EnsemblPlants:PGSC0003DMT400029338	PFscan:PS50249	PANTHER:PTHR10540
PANTHER:PTHR10540:SF8	InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI000294AEDE	RefSeq:XP_006352572.1	SEG:seg

Description

Signalosome subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400011272]

Coordinates

chr10:+:720321..726224

Molecular Weight (calculated)

34767.4 Da

IEP (calculated)

6.705

GRAVY (calculated)

-0.214

Length

311 amino acids

Sequence
(BLAST)

001: MASSSSSGLT FKLHPLVLLN ISDHYTRVKS QATGADAGSS AGADSPPPPP RVFGCVIGVQ RGRTVEIFNS FELLYDPSTH SLDRAFLEKK QELYKKVFPN
101: FYILGWYSTG SDAQESDMNI HRALMDINES PLYVLLNPSI NHAQKDLPIT IYESELHIID GIPQLIFAQA SYTIETVEAE RISVDHVAHL KPSDGGSAAT
201: QLAAHLTGTH SAIKMLNSRI RVLHHYLLAM QKGEIPCENS LLRQVSSLLR RLPTIESEKF RDDFLMEYND TLLVSYLAMF TNCSSTMNEL VDKFNTAYER
301: HSRRGGRTSF I

Best Arabidopsis Sequence Match ( AT5G56280.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM

Arabidopsis Description

CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.