Factsheet for PGSC0003DMT400069899

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052690.2.1	Tomato	cytosol	97.54	97.54
VIT_13s0019g03470.t01	Wine grape	cytosol	82.81	82.81
PGSC0003DMT400071416	Potato	cytosol	77.19	76.12
KRH31118	Soybean	endoplasmic reticulum	75.44	74.65
KRH73154	Soybean	endoplasmic reticulum	75.44	74.39
KRH14986	Soybean	endoplasmic reticulum	75.44	74.39
KRG97767	Soybean	endoplasmic reticulum	75.09	74.05
CDX74814	Canola	cytosol, plastid	72.28	71.28
CDY65775	Canola	cytosol, plastid	72.28	71.28
Bra004995.1-P	Field mustard	plastid	72.98	70.99
Bra000157.1-P	Field mustard	plastid	72.28	70.31
Os05t0104800-01	Rice	nucleus	69.82	70.07
CDY24934	Canola	plastid	71.93	69.97
KXG22419	Sorghum	plastid	70.18	69.69
GSMUA_Achr9P28480_001	Banana	cytosol	71.58	69.62
CDY60991	Canola	plastid	71.58	69.62
AT2G39990.1	Thale cress	plastid	71.23	69.28
TraesCS6D01G078000.1	Wheat	plastid	70.18	68.49
TraesCS6A01G090300.1	Wheat	golgi	70.18	68.49
Zm00001d011100_P002	Maize	plastid	68.77	68.29
TraesCS6B01G112400.2	Wheat	plastid	69.82	68.15
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	69.12	67.24
Zm00001d035752_P002	Maize	plastid	68.42	63.93
HORVU6Hr1G014610.1	Barley	plastid	69.12	63.34
GSMUA_Achr2P16060_001	Banana	cytosol	27.02	62.6
GSMUA_Achr2P16050_001	Banana	cytosol	24.91	61.21
PGSC0003DMT400056930	Potato	cytosol, plastid	10.18	25.22
PGSC0003DMT400042160	Potato	cytosol	27.37	25.16
PGSC0003DMT400029338	Potato	plastid	22.81	20.9

Protein Annotations

EntrezGene:102586073	MapMan:17.4.1.3.6	Gene3D:3.40.140.10	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	InterPro:IPR037518
InterPro:JAMM/MPN+_dom	UniProt:M1CLC1	MEROPS:M67.974	HAMAP:MF_03005	InterPro:MPN	PFAM:PF01398
PFAM:PF13012	EnsemblPlantsGene:PGSC0003DMG400027182	PGSC:PGSC0003DMG400027182	EnsemblPlants:PGSC0003DMT400069899	PFscan:PS50249	PANTHER:PTHR10540
PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI0002952456	RefSeq:XP_006355662.1	InterPro:eIF3f
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3f, eif3f [Source:PGSC_GENE;Acc:PGSC0003DMG400027182]

Coordinates

chr5:-:47973466..47977662

Molecular Weight (calculated)

31317.3 Da

IEP (calculated)

4.560

GRAVY (calculated)

-0.066

Length

285 amino acids

Sequence
(BLAST)

001: MASSDQTVLQ FSPSSASLSA KVHPLVIFNI CDCFVRRPDQ AERIIGTLLG SVLPDGTVDV RNCYAVPHSE SEDQVALDID YHHNMLSSHQ KVNPKEVIVG
101: WFSTGFGVTG GSALIQEFYS RETSNPIHLT VDTGFQNGEA SIKGFVSVHL SLGDQPLAAQ FQEIPLDLRM VEAERVGFDM LKTTTVDKLP NDLEGMEASM
201: ERLLALIDDV HKYVDDVVEG RLPQDNKTGR FIADTVATIP KLSPQAFDKL VNDGLQDQLL LLYLASLTRT QLSFAEKLNT AAQIL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.