Factsheet for Os05t0104800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
cytosol 4
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 19217306
nucleus: 19621931
cytosol: 19685898
nucleus: 23777608
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 19217306 doi

X Chen, Y Wang, J Li, A Jiang, Y Cheng, W Zhang

Department of Biochemistry and Molecular Biology, Nanjing Agricultural University, Weigang, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22419	Sorghum	plastid	86.27	85.37
Zm00001d011100_P002	Maize	plastid	84.51	83.62
TraesCS6A01G090300.1	Wheat	golgi	84.51	82.19
TraesCS6D01G078000.1	Wheat	plastid	84.15	81.85
TraesCS6B01G112400.2	Wheat	plastid	84.15	81.85
Zm00001d035752_P002	Maize	plastid	83.45	77.7
HORVU6Hr1G014610.1	Barley	plastid	83.45	76.21
KRH73154	Soybean	endoplasmic reticulum	73.59	72.32
VIT_13s0019g03470.t01	Wine grape	cytosol	72.18	71.93
KRH14986	Soybean	endoplasmic reticulum	72.89	71.63
KRG97767	Soybean	endoplasmic reticulum	72.54	71.28
GSMUA_Achr9P28480_001	Banana	cytosol	73.24	70.99
KRH31118	Soybean	endoplasmic reticulum	71.83	70.83
PGSC0003DMT400069899	Potato	cytosol	70.07	69.82
Solyc05g052690.2.1	Tomato	cytosol	69.72	69.47
Solyc11g013440.1.1	Tomato	plastid	69.37	69.12
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	71.13	68.94
CDX74814	Canola	cytosol, plastid	68.31	67.13
CDY24934	Canola	plastid	67.96	65.87
Bra004995.1-P	Field mustard	plastid	67.61	65.53
AT2G39990.1	Thale cress	plastid	67.61	65.53
CDY65775	Canola	cytosol, plastid	66.55	65.4
CDY60991	Canola	plastid	67.25	65.19
Bra000157.1-P	Field mustard	plastid	66.9	64.85
GSMUA_Achr2P16050_001	Banana	cytosol	26.06	63.79
GSMUA_Achr2P16060_001	Banana	cytosol	27.11	62.6
PGSC0003DMT400071416	Potato	cytosol	61.97	60.9
Os04t0661900-01	Rice	cytosol	15.49	25.88
Os08t0500000-01	Rice	plasma membrane	21.13	18.24
Os12t0621900-02	Rice	plastid	16.2	8.38
Os12t0622900-01	Rice	cytosol	14.08	8.02

Protein Annotations

MapMan:17.4.1.3.6	Gene3D:3.40.140.10	EntrezGene:4337552	ProteinID:AAS88838.1	ProteinID:AAU44164.1	EMBL:AK070215
EMBL:AK104207	EMBL:AK104554	ProteinID:BAF16319.1	ProteinID:BAS91860.1	ncoils:Coil	ProteinID:EEE62023.1
GO:GO:0000003	GO:GO:0000502	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0007275	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009744	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009846	GO:GO:0009856
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369
GO:GO:0033290	GO:GO:0071541	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	MEROPS:M67.974	HAMAP:MF_03005
InterPro:MPN	EnsemblPlantsGene:Os05g0104800	EnsemblPlants:Os05t0104800-01	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249
PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	UniProt:Q75M19	InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI0000358514
RefSeq:XP_015637540.1	InterPro:eIF3f	SEG:seg	:	:	:

Description

EUKARYOTIC INITIATION FACTOR 3FEukaryotic translation initiation factor 3 subunit f, Microgametogenesis (Os05t0104800-01)

Coordinates

chr5:-:260126..262272

Molecular Weight (calculated)

31240.2 Da

IEP (calculated)

5.153

GRAVY (calculated)

-0.029

Length

284 amino acids

Sequence
(BLAST)

001: MAAAEGPVLL FPSTSSTSAR VEAVVVFNIC DSYVRRPDQA ERVIGTLLGS VLPDGTVHVR NSYVVPHNES PDQVALDIEY HHNMYASHHK VNPKEVIVGW
101: FSTGFGVSGG STLIHDFYSR EVQSPIHLTV DTGFTRGDAS IKAYISSNLS LGDRHLAAQF QEIPLDLRML EAGKVGFDIL KSTIVEKLPN DLEGMESSME
201: KLYVLIDEIY KYVDDVVEGR VAPDNKIGRF ISDAVASMPK LSPAAFDKLF NDRIQDNLAL VYLSSITRTQ ISIAEKLNTA AQIL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.