Factsheet for GSMUA_Achr2P16060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
plastid 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P28480_001	Banana	cytosol	81.3	34.13
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	78.86	33.11
VIT_13s0019g03470.t01	Wine grape	cytosol	65.85	28.42
Solyc11g013440.1.1	Tomato	plastid	64.23	27.72
PGSC0003DMT400071416	Potato	cytosol	65.04	27.68
Os05t0104800-01	Rice	nucleus	62.6	27.11
Solyc05g052690.2.1	Tomato	cytosol	62.6	27.02
PGSC0003DMT400069899	Potato	cytosol	62.6	27.02
KRG97767	Soybean	endoplasmic reticulum	62.6	26.64
KRH31118	Soybean	endoplasmic reticulum	61.79	26.39
Zm00001d011100_P002	Maize	plastid	60.98	26.13
KXG22419	Sorghum	plastid	60.98	26.13
CDX74814	Canola	cytosol, plastid	60.98	25.95
TraesCS6B01G112400.2	Wheat	plastid	60.98	25.68
TraesCS6A01G090300.1	Wheat	golgi	60.98	25.68
TraesCS6D01G078000.1	Wheat	plastid	60.98	25.68
CDY65775	Canola	cytosol, plastid	60.16	25.61
KRH14986	Soybean	endoplasmic reticulum	60.16	25.61
Bra004995.1-P	Field mustard	plastid	60.16	25.26
Bra000157.1-P	Field mustard	plastid	59.35	24.91
CDY60991	Canola	plastid	59.35	24.91
KRH73154	Soybean	endoplasmic reticulum	58.54	24.91
Zm00001d035752_P002	Maize	plastid	60.98	24.59
CDY24934	Canola	plastid	58.54	24.57
HORVU6Hr1G014610.1	Barley	plastid	60.98	24.12
AT2G39990.1	Thale cress	plastid	56.91	23.89
GSMUA_Achr8P20510_001	Banana	cytosol	33.33	13.23
GSMUA_Achr9P25620_001	Banana	cytosol	33.33	13.18
GSMUA_Achr5P04140_001	Banana	plastid	26.83	10.68
GSMUA_Achr2P16050_001	Banana	cytosol	2.44	2.59

Protein Annotations

Gene3D:3.40.140.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr2G16060_001	EnsemblPlants:GSMUA_Achr2P16060_001	EnsemblPlants:GSMUA_Achr2T16060_001
InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M0S8E7	InterPro:MPN	PFAM:PF01398	PFscan:PS50249
PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	SMART:SM00232	UniParc:UPI000295DB41	InterPro:eIF3f	SEG:seg

Description

Eukaryotic translation initiation factor 3 subunit F [Source:GMGC_GENE;Acc:GSMUA_Achr2G16060_001]

Coordinates

chr2:-:17110239..17111776

Molecular Weight (calculated)

13579.3 Da

IEP (calculated)

5.972

GRAVY (calculated)

0.056

Length

123 amino acids

Sequence
(BLAST)

001: MAVIEFFPPP SPIPSATLHP VVRFNICDCY VRRSDQAERV IGTLLGSVSD GVLEIKNSYA VPHNEPADLV ALDVDYHNNM YMCHLKVNPK EVTVGWFSTG
101: FGVSGGSALI HDFYVKELKE AVK

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.