Factsheet for TraesCS6A01G090300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G112400.2	Wheat	plastid	99.66	99.66
TraesCS6D01G078000.1	Wheat	plastid	99.32	99.32
HORVU6Hr1G014610.1	Barley	plastid	91.78	86.17
KXG22419	Sorghum	plastid	83.56	85.02
Os05t0104800-01	Rice	nucleus	82.19	84.51
Zm00001d011100_P002	Maize	plastid	82.19	83.62
Zm00001d035752_P002	Maize	plastid	81.16	77.7
Solyc05g052690.2.1	Tomato	cytosol	68.49	70.18
PGSC0003DMT400069899	Potato	cytosol	68.49	70.18
KRG97767	Soybean	endoplasmic reticulum	69.18	69.9
VIT_13s0019g03470.t01	Wine grape	cytosol	68.15	69.82
KRH31118	Soybean	endoplasmic reticulum	68.84	69.79
GSMUA_Achr9P28480_001	Banana	cytosol	69.52	69.28
KRH73154	Soybean	endoplasmic reticulum	68.15	68.86
Solyc11g013440.1.1	Tomato	plastid	66.78	68.42
KRH14986	Soybean	endoplasmic reticulum	67.47	68.17
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	67.81	67.58
CDX74814	Canola	cytosol, plastid	65.41	66.09
CDY65775	Canola	cytosol, plastid	63.36	64.01
AT2G39990.1	Thale cress	plastid	64.04	63.82
Bra004995.1-P	Field mustard	plastid	64.04	63.82
CDY24934	Canola	plastid	63.7	63.48
Bra000157.1-P	Field mustard	plastid	63.7	63.48
CDY60991	Canola	plastid	63.36	63.14
GSMUA_Achr2P16060_001	Banana	cytosol	25.68	60.98
GSMUA_Achr2P16050_001	Banana	cytosol	23.97	60.34
PGSC0003DMT400071416	Potato	cytosol	58.9	59.52
TraesCS2A01G495800.1	Wheat	golgi, unclear	24.32	22.9
TraesCS7A01G241300.1	Wheat	plastid	19.52	16.91
TraesCS3A01G162000.1	Wheat	cytosol, plastid	13.01	6.43

Protein Annotations

MapMan:17.4.1.3.6	Gene3D:3.40.140.10	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005852	GO:GO:0006412	GO:GO:0007275
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009744	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009846	GO:GO:0009856	GO:GO:0009987	GO:GO:0016020
GO:GO:0019538	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	HAMAP:MF_03005	InterPro:MPN	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C	SMART:SM00232
EnsemblPlantsGene:TraesCS6A01G090300	EnsemblPlants:TraesCS6A01G090300.1	TIGR:cd08064	InterPro:eIF3f	SEG:seg	:

Description

No Description!

Coordinates

chr6A:+:58148514..58150821

Molecular Weight (calculated)

31823.9 Da

IEP (calculated)

4.894

GRAVY (calculated)

-0.006

Length

292 amino acids

Sequence
(BLAST)

001: MAAPETSACG AGPALLFPSS SSSSSSARVE AVVVFTICDS FVRRPDQAER VIGTLLGSVL PDGTVHVRNA YVVPHSESAD QVALDIEYHH NMYASHQKVN
101: PKEVLVGWFS TGFGVSGGST LIHEFYSREV QSPIHLTVDT GFTMGEASIK AYVSSNLSLG DRHLAAQFQE IPLDLKMLDA EKVGFEMLKS TMVEKLPNDL
201: EGMESSMQKL YALIDEIYKY VDDVVEARVA PDNKIGRFIA DTVSSMPKLS PASFDRLFND KIQDNLALVY LSSITRTQIA VAEKLNTAAQ VL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.