Factsheet for Solyc05g052690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069899	Potato	cytosol	97.54	97.54
Solyc11g013440.1.1	Tomato	plastid	87.37	87.37
VIT_13s0019g03470.t01	Wine grape	cytosol	81.4	81.4
KRH73154	Soybean	endoplasmic reticulum	75.44	74.39
KRH14986	Soybean	endoplasmic reticulum	75.44	74.39
KRH31118	Soybean	endoplasmic reticulum	74.74	73.96
KRG97767	Soybean	endoplasmic reticulum	74.39	73.36
Bra004995.1-P	Field mustard	plastid	72.98	70.99
CDX74814	Canola	cytosol, plastid	71.93	70.93
CDY65775	Canola	cytosol, plastid	71.93	70.93
KXG22419	Sorghum	plastid	70.53	70.03
Bra000157.1-P	Field mustard	plastid	71.93	69.97
Os05t0104800-01	Rice	nucleus	69.47	69.72
CDY24934	Canola	plastid	71.58	69.62
AT2G39990.1	Thale cress	plastid	71.58	69.62
GSMUA_Achr9P28480_001	Banana	cytosol	71.23	69.28
CDY60991	Canola	plastid	71.23	69.28
Zm00001d011100_P002	Maize	plastid	69.12	68.64
TraesCS6A01G090300.1	Wheat	golgi	70.18	68.49
TraesCS6D01G078000.1	Wheat	plastid	70.18	68.49
TraesCS6B01G112400.2	Wheat	plastid	69.82	68.15
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	68.77	66.89
Zm00001d035752_P002	Maize	plastid	68.77	64.26
HORVU6Hr1G014610.1	Barley	plastid	69.12	63.34
GSMUA_Achr2P16060_001	Banana	cytosol	27.02	62.6
GSMUA_Achr2P16050_001	Banana	cytosol	24.91	61.21
Solyc01g008370.2.1	Tomato	nucleus	26.32	24.19
Solyc10g005660.2.1	Tomato	plastid	23.16	21.09

Protein Annotations

MapMan:17.4.1.3.6	Gene3D:3.40.140.10	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	GO:GO:0071541
InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:K4C1V0	MEROPS:M67.975	HAMAP:MF_03005	InterPro:MPN
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C
SMART:SM00232	EnsemblPlantsGene:Solyc05g052690.2	EnsemblPlants:Solyc05g052690.2.1	UniParc:UPI0002765F0E	InterPro:eIF3f	SEG:seg

Description

Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/TrEMBL;Acc:K4C1V0]

Coordinates

chr5:-:62897944..62902011

Molecular Weight (calculated)

31210.1 Da

IEP (calculated)

4.613

GRAVY (calculated)

-0.061

Length

285 amino acids

Sequence
(BLAST)

001: MASSDQTALQ FSASSASLSA KVHPLVIFNI CDCFVRRPDQ AERIIGTLLG SVLPDGTVDV RNCYAVPHSE SQDQVALDID YHHNMLSSHQ KVNPKEVIVG
101: WFSTGFGVSG GSALIQEFYS RESSNPIHLT VDTGFQNGEA SIKGFVSVHL SLGDQPLAAQ FQEIPLDLRM VEAERVGFDM LKTTSVDKLP NDLEGMEASM
201: ERLLALIDDV HKYVDDVVEG RLPQDNKTGR FIADTVATIP KLSSQAFDKL VNDGLQDQLL LLYLASLTRT QLSFAEKLNT AAQIL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.