Factsheet for Zm00001d035752_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22419	Sorghum	plastid	89.84	95.47
Zm00001d011100_P002	Maize	plastid	87.87	93.38
Os05t0104800-01	Rice	nucleus	77.7	83.45
TraesCS6A01G090300.1	Wheat	golgi	77.7	81.16
TraesCS6B01G112400.2	Wheat	plastid	77.38	80.82
TraesCS6D01G078000.1	Wheat	plastid	77.05	80.48
HORVU6Hr1G014610.1	Barley	plastid	76.07	74.6
KRG97767	Soybean	endoplasmic reticulum	66.56	70.24
GSMUA_Achr9P28480_001	Banana	cytosol	67.21	69.97
VIT_13s0019g03470.t01	Wine grape	cytosol	64.92	69.47
KRH31118	Soybean	endoplasmic reticulum	65.57	69.44
Solyc11g013440.1.1	Tomato	plastid	64.26	68.77
Solyc05g052690.2.1	Tomato	cytosol	64.26	68.77
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	65.9	68.6
PGSC0003DMT400069899	Potato	cytosol	63.93	68.42
KRH73154	Soybean	endoplasmic reticulum	64.59	68.17
KRH14986	Soybean	endoplasmic reticulum	64.26	67.82
CDX74814	Canola	cytosol, plastid	61.64	65.05
CDY65775	Canola	cytosol, plastid	60.66	64.01
Bra004995.1-P	Field mustard	plastid	61.31	63.82
Bra000157.1-P	Field mustard	plastid	60.98	63.48
CDY24934	Canola	plastid	60.98	63.48
GSMUA_Achr2P16050_001	Banana	cytosol	23.93	62.93
CDY60991	Canola	plastid	60.33	62.8
AT2G39990.1	Thale cress	plastid	60.33	62.8
GSMUA_Achr2P16060_001	Banana	cytosol	24.59	60.98
PGSC0003DMT400071416	Potato	cytosol	56.39	59.52
Zm00001d001966_P001	Maize	cytosol	24.59	23.51
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	24.92	22.96
Zm00001d031323_P001	Maize	extracellular	20.33	18.67
Zm00001d052848_P004	Maize	plastid	20.33	18.18

Protein Annotations

EntrezGene:100272886	MapMan:17.4.1.3.6	Gene3D:3.40.140.10	UniProt:A0A1D6LII6	ProteinID:AQK79614.1	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0033290	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	HAMAP:MF_03005	InterPro:MPN	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C	SMART:SM00232
UniParc:UPI00084581DB	EnsemblPlantsGene:Zm00001d035752	EnsemblPlants:Zm00001d035752_P002	EnsemblPlants:Zm00001d035752_T002	InterPro:eIF3f	SEG:seg

Description

STIP1 and U box-containing protein 1%3B STIP1 homology and U box-containing protein 1

Coordinates

chr6:+:45356441..45358855

Molecular Weight (calculated)

33351.9 Da

IEP (calculated)

5.158

GRAVY (calculated)

0.026

Length

305 amino acids

Sequence
(BLAST)

001: MATSPALLFP SPSSASSAPS SARVEAVVLF NVCDSYVRRP DQADRVIGTL LGSLLSDGTV HVRNSYVVPH SESADQVAID IDYHHNMYAS HQKVNPKEVI
101: VGWFSTGFGV SGGSTLIHEF YSREVQNPIH LTVDTGFTRG EASIKAYISS NLSLRDSQLA AQFQEIPLDL KMIEAEKAGC MLPNILKLPS LLLPSVTVEI
201: LKSTMVEKLP NDLEGMESSM GKLYILIDEI YKYVDDVVEG RVAPDNRIGR FISDSFASVP KLSPAAFDKL FNDKIQDNLA LVYLSSITRT QISIAEKLNT
301: AAQVL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.