Factsheet for PGSC0003DMT400071416

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013440.1.1	Tomato	plastid	87.2	88.42
PGSC0003DMT400069899	Potato	cytosol	76.12	77.19
VIT_13s0019g03470.t01	Wine grape	cytosol	71.28	72.28
KRH31118	Soybean	endoplasmic reticulum	68.17	68.4
KRG97767	Soybean	endoplasmic reticulum	67.47	67.47
GSMUA_Achr2P16060_001	Banana	cytosol	27.68	65.04
KRH14986	Soybean	endoplasmic reticulum	64.01	64.01
KRH73154	Soybean	endoplasmic reticulum	63.67	63.67
CDY24934	Canola	plastid	63.32	62.46
CDY65775	Canola	cytosol, plastid	62.28	62.28
Bra000157.1-P	Field mustard	plastid	62.98	62.12
CDY60991	Canola	plastid	62.98	62.12
Bra004995.1-P	Field mustard	plastid	62.98	62.12
Os05t0104800-01	Rice	nucleus	60.9	61.97
KXG22419	Sorghum	plastid	60.9	61.32
CDX74814	Canola	cytosol, plastid	61.25	61.25
GSMUA_Achr9P28480_001	Banana	cytosol	61.59	60.75
AT2G39990.1	Thale cress	plastid	61.25	60.41
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	60.9	60.07
Zm00001d011100_P002	Maize	plastid	59.52	59.93
TraesCS6D01G078000.1	Wheat	plastid	59.52	58.9
TraesCS6A01G090300.1	Wheat	golgi	59.52	58.9
TraesCS6B01G112400.2	Wheat	plastid	59.17	58.56
Zm00001d035752_P002	Maize	plastid	59.52	56.39
HORVU6Hr1G014610.1	Barley	plastid	58.82	54.66
GSMUA_Achr2P16050_001	Banana	cytosol	17.3	43.1
PGSC0003DMT400042160	Potato	cytosol	25.61	23.87
PGSC0003DMT400056930	Potato	cytosol, plastid	8.3	20.87
PGSC0003DMT400029338	Potato	plastid	21.11	19.61

Protein Annotations

MapMan:17.4.1.3.6	Gene3D:3.40.140.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M1CNR2
InterPro:MPN	PFAM:PF01398	PFAM:PF13012	EnsemblPlantsGene:PGSC0003DMG400027787	PGSC:PGSC0003DMG400027787	EnsemblPlants:PGSC0003DMT400071416
PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI0002969F36
InterPro:eIF3f	SEG:seg	:	:	:	:

Description

Eukaryotic translation initiation factor 3f, eif3f [Source:PGSC_GENE;Acc:PGSC0003DMG400027787]

Coordinates

chr11:-:9772001..9781509

Molecular Weight (calculated)

31790.8 Da

IEP (calculated)

4.489

GRAVY (calculated)

0.006

Length

289 amino acids

Sequence
(BLAST)

001: MASSDHTILQ FSPTSTGISA KVHPLVIFNI CDCFVRRPDQ ADRIIGTLLG SVLPDGTVDI RNSYAVPHTE SQDQVALDSD YHHNMLSSHQ KVNPKEVIVG
101: WFSTGFGVTG GSALIHDFFS RETTNPIHLT IDTGFTNGEA SVKGFVSVHL SIGDQQLAAQ FQEIPLDLRM VEAERIGFDI LKTTAVEKLP SDLEGMEASM
201: QRLLALIDDI YKYVDDVVEG RVPQDNKIGR FISDTVASLP KLSPQDFDKL VNDGLELEMS GITFWWLICG NETYFSVPPL SFVAISALS

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.