Factsheet for Zm00001d011100_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22419	Sorghum	plastid	95.82	95.82
Zm00001d035752_P002	Maize	plastid	93.38	87.87
Os05t0104800-01	Rice	nucleus	83.62	84.51
TraesCS6A01G090300.1	Wheat	golgi	83.62	82.19
TraesCS6B01G112400.2	Wheat	plastid	83.28	81.85
TraesCS6D01G078000.1	Wheat	plastid	82.93	81.51
HORVU6Hr1G014610.1	Barley	plastid	81.88	75.56
KRG97767	Soybean	endoplasmic reticulum	72.13	71.63
VIT_13s0019g03470.t01	Wine grape	cytosol	70.03	70.53
KRH31118	Soybean	endoplasmic reticulum	70.38	70.14
GSMUA_Achr9P28480_001	Banana	cytosol	71.08	69.62
Solyc05g052690.2.1	Tomato	cytosol	68.64	69.12
PGSC0003DMT400069899	Potato	cytosol	68.29	68.77
Solyc11g013440.1.1	Tomato	plastid	68.29	68.77
KRH73154	Soybean	endoplasmic reticulum	68.99	68.51
KRH14986	Soybean	endoplasmic reticulum	68.29	67.82
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	68.99	67.58
CDX74814	Canola	cytosol, plastid	66.55	66.09
CDY65775	Canola	cytosol, plastid	65.51	65.05
Bra004995.1-P	Field mustard	plastid	66.2	64.85
Bra000157.1-P	Field mustard	plastid	65.85	64.51
CDY24934	Canola	plastid	65.85	64.51
CDY60991	Canola	plastid	65.16	63.82
AT2G39990.1	Thale cress	plastid	65.16	63.82
GSMUA_Achr2P16050_001	Banana	cytosol	24.74	61.21
GSMUA_Achr2P16060_001	Banana	cytosol	26.13	60.98
PGSC0003DMT400071416	Potato	cytosol	59.93	59.52
Zm00001d001966_P001	Maize	cytosol	24.39	21.94
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	24.39	21.15
Zm00001d031323_P001	Maize	extracellular	21.6	18.67
Zm00001d052848_P004	Maize	plastid	21.6	18.18

Protein Annotations

MapMan:17.4.1.3.6	Gene3D:3.40.140.10	ProteinID:AQK95748.1	ProteinID:AQK95749.1	GO:GO:0001731	GO:GO:0001732
GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290
InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:K7V686	HAMAP:MF_03005	InterPro:MPN	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C	SMART:SM00232
UniParc:UPI0002215B72	EnsemblPlantsGene:Zm00001d011100	EnsemblPlants:Zm00001d011100_P002	EnsemblPlants:Zm00001d011100_T002	InterPro:eIF3f	SEG:seg

Description

Eukaryotic translation initiation factor 3 subunit F

Coordinates

chr8:+:139023538..139026280

Molecular Weight (calculated)

31362.3 Da

IEP (calculated)

4.881

GRAVY (calculated)

-0.067

Length

287 amino acids

Sequence
(BLAST)

001: MATPPALLFP SPSSASSPPS SAQVEAVVLF NVCDSYVRRP DQADRVIGTL LGSLLPDGTV HVRNSYVVPH SESADQVAID IDYHHNMYAS HQKVNPKEVI
101: VGWFSTGFGV SGGSTLIHEF YSREVQSPIH LTVDTGFTRG EASIKAYVSS NLSLGDRQLA AQFQEIPLDL RMIGAEKAGF EILKSTMVEK LPNDLEGMES
201: SMEKLYILID EIYKYVDDVV EGRVAPDNRI GRLVSESVAS MPKLSPAAFD KLFNDKIQDN LALVYLSSIT RTQISIAEKL NTAAQAL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.