CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 6
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97767	Soybean	endoplasmic reticulum	93.75	93.43
KRH14986	Soybean	endoplasmic reticulum	84.03	83.74
KRH73154	Soybean	endoplasmic reticulum	84.03	83.74
VIT_13s0019g03470.t01	Wine grape	cytosol	79.86	80.7
Solyc11g013440.1.1	Tomato	plastid	76.74	77.54
CDY65775	Canola	cytosol, plastid	77.08	76.82
PGSC0003DMT400069899	Potato	cytosol	74.65	75.44
CDX74814	Canola	cytosol, plastid	75.0	74.74
Solyc05g052690.2.1	Tomato	cytosol	73.96	74.74
CDY24934	Canola	plastid	75.69	74.4
Bra004995.1-P	Field mustard	plastid	75.35	74.06
Bra000157.1-P	Field mustard	plastid	75.35	74.06
AT2G39990.1	Thale cress	plastid	74.65	73.38
CDY60991	Canola	plastid	74.65	73.38
Os05t0104800-01	Rice	nucleus	70.83	71.83
KXG22419	Sorghum	plastid	70.83	71.08
Zm00001d011100_P002	Maize	plastid	70.14	70.38
TraesCS6A01G090300.1	Wheat	golgi	69.79	68.84
TraesCS6D01G078000.1	Wheat	plastid	69.44	68.49
TraesCS6B01G112400.2	Wheat	plastid	69.44	68.49
PGSC0003DMT400071416	Potato	cytosol	68.4	68.17
GSMUA_Achr9P28480_001	Banana	cytosol	67.71	66.55
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	67.71	66.55
Zm00001d035752_P002	Maize	plastid	69.44	65.57
HORVU6Hr1G014610.1	Barley	plastid	68.06	63.02
GSMUA_Achr2P16060_001	Banana	cytosol	26.39	61.79
GSMUA_Achr2P16050_001	Banana	cytosol	23.61	58.62
KRH31114	Soybean	endoplasmic reticulum	27.78	25.89
KRG97770	Soybean	nucleus	27.78	25.89
KRH56376	Soybean	plastid	25.0	22.36
KRH62556	Soybean	plastid	24.65	22.33
KRG89488	Soybean	cytosol	12.5	13.43

Protein Annotations

EntrezGene:100790913	MapMan:17.4.1.3.6	Gene3D:3.40.140.10	EMBL:ACUP02007123	EnsemblPlantsGene:GLYMA_11G227900	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0031369	GO:GO:0033290	GO:GO:0071541	UniProt:I1LMP4	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
EnsemblPlants:KRH31118	ProteinID:KRH31118	ProteinID:KRH31118.1	MEROPS:M67.974	HAMAP:MF_03005	InterPro:MPN
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C
SMART:SM00232	UniParc:UPI000233D2A2	InterPro:eIF3f	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:32301928..32305651

Molecular Weight (calculated)

31549.8 Da

IEP (calculated)

4.972

GRAVY (calculated)

0.033

Length

288 amino acids

Sequence
(BLAST)

001: MAASDRTVLQ FSSSSSSSQS LSAKVHPLVI FNICDCYVRR PDQADRVIGT LLGSVLPDGT VDIRNSYAVP HNESIEQVAL DIEYHHNMLI SHQKVNPKEI
101: IVGWYSTGLG VTGGSALIHE FYSREVPNPI HLTVDTGFTN GAGTIKAYVS NNLSLGERQI AAQFQEIPLD LRMVEAERIG FDMLKATAVD KIPSDLEGME
201: ASMQHLLVLI DDIYKYVNDV VEGLVAPDNK IGRFISDAVG SLPKLSPSVF DKLVNDSLQD HLLLLYLSSI TRTQLSLAEK LNTAAQIL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.