CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90801
KRH75381

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05780.1	KRG90801	AT3G25860.1	24846764
AT5G05780.1	KRH75381	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97770	Soybean	nucleus	52.99	45.95
KRH31114	Soybean	endoplasmic reticulum	52.24	45.31
EES11600	Sorghum	cytosol	49.63	42.9
VIT_08s0007g01980.t01	Wine grape	cytosol	49.63	42.9
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	49.25	42.86
CDY11340	Canola	extracellular	49.25	42.86
GSMUA_Achr8P20510_001	Banana	cytosol	49.25	42.58
TraesCS2D01G496100.2	Wheat	cytosol	49.25	42.58
TraesCS2B01G524100.2	Wheat	cytosol	49.25	42.58
HORVU2Hr1G110590.1	Barley	cytosol	49.25	42.58
TraesCS2A01G495800.1	Wheat	golgi, unclear	49.25	42.58
AT5G05780.1	Thale cress	cytosol	48.88	42.53
CDX80973	Canola	cytosol, nucleus, vacuole	48.88	42.53
Bra009133.1-P	Field mustard	cytosol	48.88	42.53
Solyc01g008370.2.1	Tomato	nucleus	48.88	42.26
CDY04967	Canola	cytosol	48.51	42.21
CDX70129	Canola	cytosol, nucleus, vacuole	48.51	42.21
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	48.51	42.21
CDY14102	Canola	cytosol	48.51	42.21
GSMUA_Achr9P25620_001	Banana	cytosol	48.88	42.12
AT3G11270.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	48.51	41.94
PGSC0003DMT400042160	Potato	cytosol	48.51	41.94
CDX98863	Canola	cytosol	48.13	41.88
Zm00001d001966_P001	Maize	cytosol	49.63	41.69
VIT_02s0025g01490.t01	Wine grape	cytosol	47.76	41.29
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	48.88	39.58
CDX70711	Canola	cytosol	16.42	34.65
Os04t0661900-01	Rice	cytosol	19.03	30.0
HORVU4Hr1G012380.1	Barley	cytosol	7.46	21.28
CDY17426	Canola	cytosol, nucleus, plastid	20.52	20.07
CDY04139	Canola	cytosol	20.15	19.15
Bra017408.1-P	Field mustard	cytosol	21.27	18.51
CDX78706	Canola	cytosol	25.0	17.05
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	17.54	15.72
KRH62556	Soybean	plastid	16.79	14.15
KRH56376	Soybean	plastid	16.42	13.66
KRH14986	Soybean	endoplasmic reticulum	14.55	13.49
Bra006369.1-P	Field mustard	cytosol	20.15	13.47
KRH73154	Soybean	endoplasmic reticulum	14.18	13.15
KRH31118	Soybean	endoplasmic reticulum	13.43	12.5
KRG97767	Soybean	endoplasmic reticulum	13.43	12.46
CDY06213	Canola	cytosol	7.46	11.43

Protein Annotations

Gene3D:1.10.510.10	MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	UniProt:A0A0R0E6R3	EMBL:ACUP02012213	EnsemblPlantsGene:GLYMA_20G026100
GO:GO:0000166	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005838	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	InterPro:IPR000719	EnsemblPlants:KRG89488	ProteinID:KRG89488
ProteinID:KRG89488.1	InterPro:Kinase-like_dom_sf	InterPro:MPN_RPN7_8	PFAM:PF00069	PFAM:PF13012	PANTHER:PTHR10540
PANTHER:PTHR10540:SF7	InterPro:Prot_kinase_dom	InterPro:Rpn11/EIF3F_C	SUPFAM:SSF56112	UniParc:UPI0006ED7E6C	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:2868646..2871352

Molecular Weight (calculated)

30798.4 Da

IEP (calculated)

6.601

GRAVY (calculated)

-0.044

Length

268 amino acids

Sequence
(BLAST)

001: MGFSFWFTTK EHVVGWYSTG PKLRENDFDT HGLFNVYVPN PVLVIIDVEP KELGIPRKTY YVVEEVKEYS KKLTYSLFCV HNATQKSQKV FIHVPSEIAT
101: NEVEEILVEH LLRYVKDTTI SILVTKVSAN LTTLKGLDAR LKEIRGFFDL VIDGKLPLNH EILYHLQDVF NLLPNLNVVD LLSRLWYRAP ELLLGSTDYG
201: FNIDLCSAGC LLAEMLVGRP IMPGRTGLEQ IHMIFKLCGS SSEDYFKKLK LTSYQPPNHY KLSFEENF

Best Arabidopsis Sequence Match ( AT3G11270.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVIVH PLVLLSIVDH YNRVAKDTSK RVVGVLLGSS SRGTVDVTNS YAVPFEEDDK DTSIWFLDHN YHESMFHMFK RINAKEHIVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ QVFVHVPTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRTYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFAVK TNDMMLVIYL SSLIRSVIAL HSLINNKLLN KEHEKAEDSK
301: PVDIPLITES

Arabidopsis Description

RPN8B26S proteasome non-ATPase regulatory subunit 7 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9C774]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.