Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G05780.1 | CDX83563 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY04184 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY13593 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY39183 | AT3G25860.1 | 24846764 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006369.1-P | Field mustard | cytosol | 86.26 | 84.54 |
| CDX70711 | Canola | cytosol | 19.85 | 61.42 |
| VIT_03s0017g00150.t01 | Wine grape | nucleus | 11.2 | 45.36 |
| Os04t0661900-01 | Rice | cytosol | 19.59 | 45.29 |
| VIT_07s0005g03000.t01 | Wine grape | nucleus | 10.94 | 44.33 |
| AT5G05780.1 | Thale cress | cytosol | 30.03 | 38.31 |
| CDY14102 | Canola | cytosol | 30.03 | 38.31 |
| CDY11340 | Canola | extracellular | 30.03 | 38.31 |
| CDY04967 | Canola | cytosol | 30.03 | 38.31 |
| CDX70129 | Canola | cytosol, nucleus, vacuole | 30.03 | 38.31 |
| CDX80973 | Canola | cytosol, nucleus, vacuole | 30.03 | 38.31 |
| CDX98863 | Canola | cytosol | 29.26 | 37.34 |
| AT3G11270.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 28.75 | 36.45 |
| KRG97770 | Soybean | nucleus | 27.74 | 35.28 |
| EES11600 | Sorghum | cytosol | 27.74 | 35.16 |
| HORVU4Hr1G012380.1 | Barley | cytosol | 8.4 | 35.11 |
| CDY17426 | Canola | cytosol, nucleus, plastid | 24.43 | 35.04 |
| KRH31114 | Soybean | endoplasmic reticulum | 27.48 | 34.95 |
| TraesCS2D01G496100.2 | Wheat | cytosol | 27.23 | 34.52 |
| TraesCS2B01G524100.2 | Wheat | cytosol | 27.23 | 34.52 |
| TraesCS2A01G495800.1 | Wheat | golgi, unclear | 27.23 | 34.52 |
| HORVU2Hr1G110590.1 | Barley | cytosol | 27.23 | 34.52 |
| PGSC0003DMT400042160 | Potato | cytosol | 26.97 | 34.19 |
| GSMUA_Achr8P20510_001 | Banana | cytosol | 26.97 | 34.19 |
| Zm00001d001966_P001 | Maize | cytosol | 27.74 | 34.17 |
| GSMUA_Achr9P25620_001 | Banana | cytosol | 26.97 | 34.08 |
| Solyc01g008370.2.1 | Tomato | nucleus | 26.72 | 33.87 |
| CDY04139 | Canola | cytosol | 24.17 | 33.69 |
| Zm00001d026517_P001 | Maize | cytosol, nucleus, plasma membrane | 27.99 | 33.23 |
| CDY06213 | Canola | cytosol | 13.49 | 30.29 |
| KRG89488 | Soybean | cytosol | 17.05 | 25.0 |
| CDX74814 | Canola | cytosol, plastid | 14.5 | 19.72 |
| CDY60991 | Canola | plastid | 14.5 | 19.45 |
| CDY65775 | Canola | cytosol, plastid | 14.25 | 19.38 |
| CDY24934 | Canola | plastid | 14.25 | 19.11 |
| CDX94336 | Canola | plastid | 12.21 | 15.09 |
| CDX89337 | Canola | plastid | 11.7 | 14.47 |
| CDY42737 | Canola | plastid | 11.45 | 14.15 |
| CDX92773 | Canola | plastid | 11.96 | 13.35 |
| CDY32798 | Canola | plastid | 10.43 | 13.06 |
| CDY49389 | Canola | plastid | 10.43 | 12.89 |
Protein Annotations
| Gene3D:3.30.70.330 | Gene3D:3.40.140.10 | MapMan:35.1 | GO:A0A078CND4 | EnsemblPlants:CDX78706 | ProteinID:CDX78706 |
| ProteinID:CDX78706.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005838 | EnsemblPlantsGene:GSBRNA2T00130134001 | InterPro:IPR012677 | InterPro:JAMM/MPN+_dom |
| InterPro:MPN_RPN7_8 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF01398 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF7 | InterPro:RBD_domain_sf |
| SUPFAM:SSF54928 | UniParc:UPI0004EEB63A | : | : | : | : |
Description
BnaA03g06180D
Coordinates
chrLK031815:+:1889516..1891827
Molecular Weight (calculated)
44077.9 Da
IEP (calculated)
7.541
GRAVY (calculated)
-0.146
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVLETQQIT ARTIEKVVVH PLVLRGSSNG IVHVINSYPV PFKEDDKDPC RGFFDHKHHL SMLQRFHGIN DMVGWYSTGP ELRDNDLYVH AQFCHYAPNP
101: VLVVIDVVLG IPTNAYYTMS SLEKIEKEVF VRASVEIAPR EVKEDSGEEH LLSEFQDTTT EIAPNRMTLG GVSFVDAMES YMEFYKNQVR ISVEGYDLSL
201: RPVDLDISLV KHFSSCGNVE FVKVPRDPVT NAISGTSTTV VLRGKGASEK ALALNGSDVG GWRASVKILP PALSSLRSGL TTREAARQYV AHFKRYMSRG
301: ITVKGYDYSL CEADVKRALV NYFSSCGEIT DVFVFKRRAL VYFFEYEAVE SALKVCRPSQ RRVTGTCFRA RAMPIPKRLI VYGPDSCLAT PTY
101: VLVVIDVVLG IPTNAYYTMS SLEKIEKEVF VRASVEIAPR EVKEDSGEEH LLSEFQDTTT EIAPNRMTLG GVSFVDAMES YMEFYKNQVR ISVEGYDLSL
201: RPVDLDISLV KHFSSCGNVE FVKVPRDPVT NAISGTSTTV VLRGKGASEK ALALNGSDVG GWRASVKILP PALSSLRSGL TTREAARQYV AHFKRYMSRG
301: ITVKGYDYSL CEADVKRALV NYFSSCGEIT DVFVFKRRAL VYFFEYEAVE SALKVCRPSQ RRVTGTCFRA RAMPIPKRLI VYGPDSCLAT PTY
001: MDVIKTQQIS ARTIEKVIVH PLVLLSIVDH YNRVAKDTSK RVVGVLLGSS SRGTVDVTNS YAVPFEEDDK DTSIWFLDHN YHESMFHMFK RINAKEHIVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ QVFVHVPTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRTYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFAVK TNDMMLVIYL SSLIRSVIAL HSLINNKLLN KEHEKAEDSK
301: PVDIPLITES
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ QVFVHVPTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRTYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFAVK TNDMMLVIYL SSLIRSVIAL HSLINNKLLN KEHEKAEDSK
301: PVDIPLITES
Arabidopsis Description
RPN8B26S proteasome non-ATPase regulatory subunit 7 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9C774]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.