Factsheet for Bra006369.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017345.1-P
Bra025167.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05780.1	Bra017345.1-P	AT3G25860.1	24846764
AT5G05780.1	Bra025167.1-P	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78706	Canola	cytosol	84.54	86.26
Os04t0661900-01	Rice	cytosol	22.94	54.12
VIT_03s0017g00150.t01	Wine grape	nucleus	10.22	42.27
Bra017408.1-P	Field mustard	cytosol	31.92	41.56
VIT_07s0005g03000.t01	Wine grape	nucleus	9.98	41.24
HORVU4Hr1G012380.1	Barley	cytosol	9.23	39.36
AT5G05780.1	Thale cress	cytosol	30.17	39.29
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	29.93	38.96
Bra009133.1-P	Field mustard	cytosol	29.93	38.96
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	29.68	38.64
AT3G11270.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	28.93	37.42
KRG97770	Soybean	nucleus	28.18	36.57
KRH31114	Soybean	endoplasmic reticulum	27.93	36.25
EES11600	Sorghum	cytosol	27.93	36.13
TraesCS2B01G524100.2	Wheat	cytosol	27.68	35.81
HORVU2Hr1G110590.1	Barley	cytosol	27.68	35.81
TraesCS2A01G495800.1	Wheat	golgi, unclear	27.68	35.81
TraesCS2D01G496100.2	Wheat	cytosol	27.68	35.81
Zm00001d001966_P001	Maize	cytosol	27.93	35.11
PGSC0003DMT400042160	Potato	cytosol	26.93	34.84
GSMUA_Achr8P20510_001	Banana	cytosol	26.68	34.52
Solyc01g008370.2.1	Tomato	nucleus	26.68	34.52
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	28.18	34.14
GSMUA_Achr9P25620_001	Banana	cytosol	26.43	34.08
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	25.19	33.78
Bra000157.1-P	Field mustard	plastid	15.21	20.82
KRG89488	Soybean	cytosol	13.47	20.15
Bra004995.1-P	Field mustard	plastid	14.46	19.8
Bra026439.1-P	Field mustard	plastid	11.97	15.09
Bra019106.1-P	Field mustard	plastid	11.97	15.09
Bra002827.1-P	Field mustard	plastid	11.22	14.33

Protein Annotations

Gene3D:3.30.70.330	Gene3D:3.40.140.10	MapMan:35.1	EnsemblPlantsGene:Bra006369	EnsemblPlants:Bra006369.1	EnsemblPlants:Bra006369.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005838	InterPro:IPR012677	InterPro:JAMM/MPN+_dom	UniProt:M4CQ80	InterPro:MPN_RPN7_8
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF01398	PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	InterPro:RBD_domain_sf	SMART:SM00232
SUPFAM:SSF54928	UniParc:UPI000253F60C	SEG:seg	:	:	:

Description

AT5G05780 (E=3e-045) RPN8A, AE3, ATHMOV34 | RPN8A (RP NON-ATPASE SUBUNIT 8A)

Coordinates

chrA03:+:3210316..3212616

Molecular Weight (calculated)

44979.1 Da

IEP (calculated)

8.361

GRAVY (calculated)

-0.130

Length

401 amino acids

Sequence
(BLAST)

001: MDVTETQQIT ARTIEKVVVH PLVLRNIVDD YNRVAKESGK RVVGVLLGGS SNGIVHVINS YPVPFKEDDK DPCRGFFDHK HHLSMLQRFH GINDMVGWYS
101: TGPELRDNDL YVHAQFCHYA PNPVLVVIDV VLGIPTNAYY TMSSLEKIEK EVFVREEHLL SEFQDTTTEI APKRMTLGGV SFVDAMESYM EFYKNQVRIS
201: VEGYDISLRP VDLDISLVKH FSSCGNVEFV KVPRDPVTNA ISGTSTTVVL RGKGAAEKAL ALNGSDVGGW RASVKILPPA LSSLRSGLTT REAARQYVAH
301: FKRYMSRGIT VKGYDYSLCE ADVKRALVNY FSSCGEITDV FVFKRRALVY FFEYEAVESA LKVCRPSQRR VTGTCFRARA MPIPKRLIVY GPDSCLATPT
401: Y

Best Arabidopsis Sequence Match ( AT5G05780.2 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE NATQKSQKVF VHVSTEIAAH EVEEIGVEHL LRDVKDTTIS TLATEVTAKL
201: TALKGLDARL REIRSYLDLV IEGKLPLNHE ILYHLQDVFN LLPNLNVNEL VKAFSVKTND MMLVIYLSSL IRSVIALHNL INNKLLNKEH EKAEDSKPVA
301: IPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.