Factsheet for Bra002827.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002827.1-P
Bra006246.1-P
Bra006326.1-P
Bra012303.1-P
Bra012351.1-P
Bra023453.1-P
Bra024548.1-P
Bra032666.1-P
Bra033219.1-P
Bra033654.1-P
Bra035336.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56280.1	Bra012303.1-P	AT1G02090.1	11701877
AT5G56280.1	Bra032666.1-P	AT1G02090.1	11701877
AT5G56280.1	Bra033219.1-P	AT1G02090.1	11701877
AT5G56280.1	Bra012303.1-P	AT1G02090.1	11742986
AT5G56280.1	Bra032666.1-P	AT1G02090.1	11742986
AT5G56280.1	Bra033219.1-P	AT1G02090.1	11742986
AT5G56280.1	Bra012303.1-P	AT1G02090.1	12615944
AT5G56280.1	Bra032666.1-P	AT1G02090.1	12615944
AT5G56280.1	Bra033219.1-P	AT1G02090.1	12615944
AT5G56280.1	Bra012351.1-P	AT1G22920.1	11701877
AT5G56280.1	Bra024548.1-P	AT1G22920.1	11701877
AT5G56280.1	Bra012351.1-P	AT1G22920.1	11742986
AT5G56280.1	Bra024548.1-P	AT1G22920.1	11742986
AT5G56280.1	Bra012351.1-P	AT1G22920.1	12615944
AT5G56280.1	Bra024548.1-P	AT1G22920.1	12615944
AT5G56280.1	Bra012351.1-P	AT1G22920.1	21798944
AT5G56280.1	Bra024548.1-P	AT1G22920.1	21798944
AT5G56280.1	Bra006246.1-P	AT5G14250.1	11701877
AT5G56280.1	Bra006326.1-P	AT5G14250.1	11701877
AT5G56280.1	Bra023453.1-P	AT5G14250.1	11701877
AT5G56280.1	Bra006246.1-P	AT5G14250.1	12615944
AT5G56280.1	Bra006326.1-P	AT5G14250.1	12615944
AT5G56280.1	Bra023453.1-P	AT5G14250.1	12615944
AT5G56280.1	Bra033654.1-P	AT5G42970.1	11701877
AT5G56280.1	Bra035336.1-P	AT5G42970.1	11701877
AT5G56280.1	Bra033654.1-P	AT5G42970.1	12615944
AT5G56280.1	Bra035336.1-P	AT5G42970.1	12615944
AT5G56280.1	Bra002827.1-P	AT5G56280.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32798	Canola	plastid	98.73	98.73
AT5G56280.1	Thale cress	plastid	87.9	87.07
VIT_19s0015g01950.t01	Wine grape	plastid	80.89	80.13
KRH62556	Soybean	plastid	80.25	79.25
GSMUA_Achr5P04140_001	Banana	plastid	77.71	78.96
Solyc10g005660.2.1	Tomato	plastid	77.39	77.64
Bra026439.1-P	Field mustard	plastid	78.34	77.36
KRH56376	Soybean	plastid	79.3	77.33
Bra019106.1-P	Field mustard	plastid	75.48	74.53
PGSC0003DMT400056930	Potato	cytosol, plastid	27.07	73.91
Os08t0500000-01	Rice	plasma membrane	76.11	72.64
EES14305	Sorghum	plastid	75.8	71.69
Zm00001d031323_P001	Maize	extracellular	74.84	70.78
TraesCS7A01G241300.1	Wheat	plastid	75.48	70.33
TraesCS7D01G240300.1	Wheat	golgi, unclear	75.48	70.33
HORVU7Hr1G049190.1	Barley	plastid	75.16	70.03
TraesCS7B01G136800.1	Wheat	plastid	74.52	69.44
Zm00001d052848_P004	Maize	plastid	75.16	69.21
Bra004995.1-P	Field mustard	plastid	20.38	21.84
Bra009133.1-P	Field mustard	cytosol	21.34	21.75
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	21.34	21.75
Bra000157.1-P	Field mustard	plastid	20.06	21.5
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	21.02	21.43
Bra017408.1-P	Field mustard	cytosol	15.92	16.23
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	13.69	14.38
Bra006369.1-P	Field mustard	cytosol	14.33	11.22

Protein Annotations

MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	EnsemblPlantsGene:Bra002827	EnsemblPlants:Bra002827.1	EnsemblPlants:Bra002827.1-P	GO:GO:0000338
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008180	GO:GO:0009056	GO:GO:0009987	GO:GO:0010387	GO:GO:0016043	GO:GO:0019538
InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M4CF45	InterPro:MPN	InterPro:MPN_CSN6	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF8	InterPro:Rpn11/EIF3F_C	SMART:SM00232
UniParc:UPI0002544863	SEG:seg	:	:	:	:

Description

AT5G56280 (E=3e-157) CSN6A | CSN6A

Coordinates

chrA10:-:7310773..7312954

Molecular Weight (calculated)

35367.4 Da

IEP (calculated)

6.231

GRAVY (calculated)

-0.187

Length

314 amino acids

Sequence
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPPSVCA TENNGEAMLQ PNPRVYGCVI GVQRGRTVEI FNSFELLFDP SSETLDRSFL EKKQELYKKV
101: FPDFYVLGWY STGNDAEESD MLIHKALMDI NESPVYVLLN PSINHAHKDL PVTIYESELH VIDGIPQLIF AHTSYTIETV EAERISVDHV AHLKPSDGGS
201: AATQLAAHLT GIHSAIKMLN SRIRVLHQFL AAMQKGDIPC ENSLLRQVSS LLRRLPAMES ERFQDNFLME YNDKLLVTYL AMITNCTSTM DEMVDKFNIA
301: YDRNARRGGR TAFM

Best Arabidopsis Sequence Match ( AT5G56280.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM

Arabidopsis Description

CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.