Factsheet for Bra019106.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012303.1-P
Bra012351.1-P
Bra024548.1-P
Bra032666.1-P
Bra033219.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	Bra012303.1-P	AT1G02090.1	11742986
AT4G26430.1	Bra032666.1-P	AT1G02090.1	11742986
AT4G26430.1	Bra033219.1-P	AT1G02090.1	11742986
AT4G26430.1	Bra012303.1-P	AT1G02090.1	21798944
AT4G26430.1	Bra032666.1-P	AT1G02090.1	21798944
AT4G26430.1	Bra033219.1-P	AT1G02090.1	21798944
AT4G26430.1	Bra012351.1-P	AT1G22920.1	11742986
AT4G26430.1	Bra024548.1-P	AT1G22920.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42737	Canola	plastid	98.11	98.11
AT4G26430.1	Thale cress	plastid	84.91	85.17
Bra026439.1-P	Field mustard	plastid	84.59	84.59
VIT_19s0015g01950.t01	Wine grape	plastid	77.36	77.6
Bra002827.1-P	Field mustard	plastid	74.53	75.48
Solyc10g005660.2.1	Tomato	plastid	73.9	75.08
GSMUA_Achr5P04140_001	Banana	plastid	72.01	74.11
KRH62556	Soybean	plastid	72.96	72.96
KRH56376	Soybean	plastid	72.33	71.43
PGSC0003DMT400056930	Potato	cytosol, plastid	25.79	71.3
Os08t0500000-01	Rice	plasma membrane	71.38	69.0
EES14305	Sorghum	plastid	70.44	67.47
Zm00001d031323_P001	Maize	extracellular	69.5	66.57
TraesCS7A01G241300.1	Wheat	plastid	70.13	66.17
TraesCS7D01G240300.1	Wheat	golgi, unclear	70.13	66.17
HORVU7Hr1G049190.1	Barley	plastid	69.81	65.88
TraesCS7B01G136800.1	Wheat	plastid	69.5	65.58
Zm00001d052848_P004	Maize	plastid	70.13	65.4
Bra004995.1-P	Field mustard	plastid	22.01	23.89
Bra000157.1-P	Field mustard	plastid	21.38	23.21
Bra009133.1-P	Field mustard	cytosol	21.7	22.4
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	21.7	22.4
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	21.38	22.08
Bra017408.1-P	Field mustard	cytosol	16.04	16.56
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	13.21	14.05
Bra006369.1-P	Field mustard	cytosol	15.09	11.97

Protein Annotations

MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	EnsemblPlantsGene:Bra019106	EnsemblPlants:Bra019106.1	EnsemblPlants:Bra019106.1-P	GO:GO:0000338
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987
GO:GO:0019538	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M4DRG3	InterPro:MPN	InterPro:MPN_CSN6
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF8	InterPro:Rpn11/EIF3F_C
SMART:SM00232	UniParc:UPI00025411DD	SEG:seg	:	:	:

Description

AT4G26430 (E=7e-152) CSN6B | CSN6B

Coordinates

chrA03:+:26294872..26297063

Molecular Weight (calculated)

35118.1 Da

IEP (calculated)

6.908

GRAVY (calculated)

-0.082

Length

318 amino acids

Sequence
(BLAST)

001: MAPSSSSGLT FKLHPLVMLN ISDHFTRVKT QLNPPSSSCA AGNTPAAVAA TFPQSFRVYG CVIGAQRGRT VEIFNSFELV FDPTTDSLDR AFLEKKQELY
101: QKVFPGFYIL GWYSTGSEAN ESDMHIHKAL MDINESPVYV VLNPAINHAQ KDLPVTIYES EFHVIDGIPQ SIFVDASYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLF QYLVAMQKGD IPCDNSLLRQ AAGLLRSLPA AHSEKFNDNF LMEYNDKLLM SYLAMITNCT SNMNEVVDKV
301: KTAYAKKSRT GGSRIPFM

Best Arabidopsis Sequence Match ( AT4G26430.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVMLN ISDHFTRVKT QLNPPAASCA TGNGSNNADA MLLQNPRVYG CVIGLQRGRT VEIFNSFELI FDPALDTLDR SFLEKKQELY
101: KKVFPDFYVL GWYSTGSDAT ESDMHIHKAL MDINESPVYV LLNPAINHAQ KDLPVTIYES EFHVIDGIPQ SIFVHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QHIVAMQKGD KPCENSVLRQ VSSLLRSLPA AESEKFNENF LMEYNDKLLM SYLAMITNCT SNMNEVVDKF
301: NTAYDKHSRR GGRTAFM

Arabidopsis Description

CSN6BCOP9 signalosome complex subunit 6b [Source:UniProtKB/Swiss-Prot;Acc:Q8W1P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.