Factsheet for Solyc10g005660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090290.2.1
Solyc02g093920.2.1
Solyc04g080160.2.1
Solyc06g073150.2.1
Solyc10g005660.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	Solyc01g090290.2.1	AT1G02090.1	11742986
AT4G26430.1	Solyc01g090290.2.1	AT1G02090.1	21798944
AT4G26430.1	Solyc06g073150.2.1	AT1G22920.1	11742986
AT4G26430.1	Solyc11g017300.1.1	AT1G22920.1	11742986
AT4G26430.1	Solyc06g073150.2.1	AT1G71230.1	11742986
AT4G26430.1	Solyc11g017300.1.1	AT1G71230.1	11742986
AT5G56280.1	Solyc01g090290.2.1	AT1G02090.1	11701877
AT5G56280.1	Solyc01g090290.2.1	AT1G02090.1	11742986
AT5G56280.1	Solyc01g090290.2.1	AT1G02090.1	12615944
AT5G56280.1	Solyc06g073150.2.1	AT1G22920.1	11701877
AT5G56280.1	Solyc11g017300.1.1	AT1G22920.1	11701877
AT5G56280.1	Solyc06g073150.2.1	AT1G22920.1	11742986
AT5G56280.1	Solyc11g017300.1.1	AT1G22920.1	11742986
AT5G56280.1	Solyc06g073150.2.1	AT1G22920.1	12615944
AT5G56280.1	Solyc11g017300.1.1	AT1G22920.1	12615944
AT5G56280.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT5G56280.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT5G56280.1	Solyc06g073150.2.1	AT1G71230.1	11742986
AT5G56280.1	Solyc11g017300.1.1	AT1G71230.1	11742986
AT5G56280.1	Solyc02g093920.2.1	AT5G14250.1	11701877
AT5G56280.1	Solyc02g093920.2.1	AT5G14250.1	12615944
AT5G56280.1	Solyc04g080160.2.1	AT5G42970.1	11701877
AT5G56280.1	Solyc04g080160.2.1	AT5G42970.1	12615944
AT5G56280.1	Solyc10g005660.2.1	AT5G56280.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029338	Potato	plastid	95.53	96.14
VIT_19s0015g01950.t01	Wine grape	plastid	88.5	87.38
GSMUA_Achr5P04140_001	Banana	plastid	81.15	82.2
KRH56376	Soybean	plastid	84.03	81.68
KRH62556	Soybean	plastid	82.75	81.45
CDY49389	Canola	plastid	79.23	77.99
CDY32798	Canola	plastid	77.96	77.71
Bra002827.1-P	Field mustard	plastid	77.64	77.39
AT5G56280.1	Thale cress	plastid	78.27	77.29
CDX94336	Canola	plastid	77.64	76.42
CDX89337	Canola	plastid	77.64	76.42
Bra026439.1-P	Field mustard	plastid	77.64	76.42
AT4G26430.1	Thale cress	plastid	76.68	75.71
CDY42737	Canola	plastid	75.08	73.9
Bra019106.1-P	Field mustard	plastid	75.08	73.9
Os08t0500000-01	Rice	plasma membrane	75.4	71.73
EES14305	Sorghum	plastid	75.08	70.78
Zm00001d031323_P001	Maize	extracellular	75.08	70.78
TraesCS7D01G240300.1	Wheat	golgi, unclear	75.72	70.33
TraesCS7A01G241300.1	Wheat	plastid	75.72	70.33
HORVU7Hr1G049190.1	Barley	plastid	75.4	70.03
TraesCS7B01G136800.1	Wheat	plastid	75.08	69.73
Zm00001d052848_P004	Maize	plastid	74.44	68.33
CDX92773	Canola	plastid	70.93	63.07
Solyc11g013440.1.1	Tomato	plastid	22.68	24.91
Solyc05g052690.2.1	Tomato	cytosol	21.09	23.16
Solyc01g008370.2.1	Tomato	nucleus	21.73	21.94

Protein Annotations

MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	GO:GO:0000338	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008180	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
UniProt:K4CX98	MEROPS:M67.972	InterPro:MPN	InterPro:MPN_CSN6	PFAM:PF01398	PFAM:PF13012
PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF8	InterPro:Rpn11/EIF3F_C	SMART:SM00232	EnsemblPlantsGene:Solyc10g005660.2
EnsemblPlants:Solyc10g005660.2.1	UniParc:UPI000276C969	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:536061..541079

Molecular Weight (calculated)

34927.6 Da

IEP (calculated)

6.705

GRAVY (calculated)

-0.190

Length

313 amino acids

Sequence
(BLAST)

001: MASSSSSGLT FKLHPLVLLN ISDHYTRVKS QATGADAGAG SSATADSPPA PPRVFGCVIG VQRGRTVEIF NSFELLYDPS THSLDRAFLE KKQELYKKVF
101: PNFYILGWYS TGSDAQESDM NIHRALMDIN ESPLYVLLNP SINHAQKDLP ISIYESELHI IDGIPQLIFV QASYTIETVE AERISVDHVA HLKPSDGGSA
201: ATQLAAHLTG THSAIKMLNS RIRVLHHYLL AMQKGEIPCE NSLLRQVSSL LRRLPTIESE KFRDDFLMEY NDTLLVSYLA MFTNCSSTMN ELVDKFNTAY
301: ERHSRRGGRT SFI

Best Arabidopsis Sequence Match ( AT5G56280.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM

Arabidopsis Description

CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.