Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002827.1-P | Field mustard | plastid | 98.73 | 98.73 |
| CDY49389 | Canola | plastid | 93.63 | 92.45 |
| AT5G56280.1 | Thale cress | plastid | 88.85 | 88.01 |
| VIT_19s0015g01950.t01 | Wine grape | plastid | 81.21 | 80.44 |
| GSMUA_Achr5P04140_001 | Banana | plastid | 78.34 | 79.61 |
| KRH62556 | Soybean | plastid | 80.57 | 79.56 |
| CDX94336 | Canola | plastid | 79.62 | 78.62 |
| CDX89337 | Canola | plastid | 79.3 | 78.3 |
| Solyc10g005660.2.1 | Tomato | plastid | 77.71 | 77.96 |
| KRH56376 | Soybean | plastid | 79.62 | 77.64 |
| CDY42737 | Canola | plastid | 77.07 | 76.1 |
| PGSC0003DMT400056930 | Potato | cytosol, plastid | 27.07 | 73.91 |
| Os08t0500000-01 | Rice | plasma membrane | 77.39 | 73.86 |
| EES14305 | Sorghum | plastid | 76.75 | 72.59 |
| Zm00001d031323_P001 | Maize | extracellular | 75.8 | 71.69 |
| TraesCS7D01G240300.1 | Wheat | golgi, unclear | 76.43 | 71.22 |
| TraesCS7A01G241300.1 | Wheat | plastid | 76.43 | 71.22 |
| HORVU7Hr1G049190.1 | Barley | plastid | 76.11 | 70.92 |
| TraesCS7B01G136800.1 | Wheat | plastid | 75.48 | 70.33 |
| Zm00001d052848_P004 | Maize | plastid | 76.11 | 70.09 |
| CDX92773 | Canola | plastid | 72.93 | 65.06 |
| CDX74814 | Canola | cytosol, plastid | 21.66 | 23.53 |
| CDY65775 | Canola | cytosol, plastid | 20.7 | 22.49 |
| CDY24934 | Canola | plastid | 20.7 | 22.18 |
| CDY60991 | Canola | plastid | 20.7 | 22.18 |
| CDX80973 | Canola | cytosol, nucleus, vacuole | 21.66 | 22.08 |
| CDX70129 | Canola | cytosol, nucleus, vacuole | 21.66 | 22.08 |
| CDX98863 | Canola | cytosol | 21.66 | 22.08 |
| CDY14102 | Canola | cytosol | 21.66 | 22.08 |
| CDY11340 | Canola | extracellular | 21.66 | 22.08 |
| CDY04967 | Canola | cytosol | 21.66 | 22.08 |
| CDY06213 | Canola | cytosol | 11.46 | 20.57 |
| CDX70711 | Canola | cytosol | 7.96 | 19.68 |
| CDY17426 | Canola | cytosol, nucleus, plastid | 14.97 | 17.15 |
| CDY04139 | Canola | cytosol | 14.65 | 16.31 |
| CDX78706 | Canola | cytosol | 13.06 | 10.43 |
Protein Annotations
| MapMan:19.2.3.3.1.6 | Gene3D:3.40.140.10 | UniProt:A0A078H7G8 | EnsemblPlants:CDY32798 | ProteinID:CDY32798 | ProteinID:CDY32798.1 |
| GO:GO:0000338 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00052871001 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN |
| InterPro:MPN_CSN6 | PFAM:PF01398 | PFAM:PF13012 | PFscan:PS50249 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF8 |
| InterPro:Rpn11/EIF3F_C | SMART:SM00232 | UniParc:UPI0004EF0AF6 | SEG:seg | : | : |
Description
BnaA10g10510DBnaA10g10510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7G8]
Coordinates
chrLK032299:+:360002..361858
Molecular Weight (calculated)
35396.5 Da
IEP (calculated)
6.372
GRAVY (calculated)
-0.200
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPPSVCA TENNGEAMLQ PNPRVYGCVI GVQRGRTVEI FNSFELLFDP SSETLDRSFL EKKQELYKKV
101: FPDFYVLGWY STGNDAEESD MLIHKALMDI NESPVYVLLN PAINHAHKDL PVTIYESELH VIDGIPQLIF AHTSYTIETV EAERISVDHV AHLKPSDGGS
201: AATQLAAHLT GIHSAIKMLN SRIRVLHQYL AAMQKGDIPC ENSLLRQVSS LLRRLPAMES ERFQDNFLME YNDKLLVTYL AMITNCTSTM NEMVDKFNIA
301: YDRNTRRGGR TAFM
101: FPDFYVLGWY STGNDAEESD MLIHKALMDI NESPVYVLLN PAINHAHKDL PVTIYESELH VIDGIPQLIF AHTSYTIETV EAERISVDHV AHLKPSDGGS
201: AATQLAAHLT GIHSAIKMLN SRIRVLHQYL AAMQKGDIPC ENSLLRQVSS LLRRLPAMES ERFQDNFLME YNDKLLVTYL AMITNCTSTM NEMVDKFNIA
301: YDRNTRRGGR TAFM
001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
Arabidopsis Description
CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.