CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	99.68	99.68
CDX80973	Canola	cytosol, nucleus, vacuole	99.68	99.68
CDY14102	Canola	cytosol	99.35	99.35
CDY04967	Canola	cytosol	99.35	99.35
CDX70129	Canola	cytosol, nucleus, vacuole	99.03	99.03
CDX98863	Canola	cytosol	98.05	98.05
EES11600	Sorghum	cytosol	91.88	91.29
KRH31114	Soybean	endoplasmic reticulum	90.58	90.29
HORVU2Hr1G110590.1	Barley	cytosol	90.58	90.0
KRG97770	Soybean	nucleus	89.94	89.64
TraesCS2A01G495800.1	Wheat	golgi, unclear	89.94	89.35
TraesCS2B01G524100.2	Wheat	cytosol	89.94	89.35
TraesCS2D01G496100.2	Wheat	cytosol	89.94	89.35
GSMUA_Achr9P25620_001	Banana	cytosol	89.61	88.75
Zm00001d001966_P001	Maize	cytosol	91.88	88.71
Solyc01g008370.2.1	Tomato	nucleus	88.64	88.06
PGSC0003DMT400042160	Potato	cytosol	88.64	88.06
GSMUA_Achr8P20510_001	Banana	cytosol	88.31	87.74
Os04t0661900-01	Rice	cytosol	44.81	81.18
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	86.36	80.36
VIT_07s0005g03000.t01	Wine grape	nucleus	21.75	69.07
VIT_03s0017g00150.t01	Wine grape	nucleus	21.1	67.01
HORVU4Hr1G012380.1	Barley	cytosol	19.48	63.83
KRG89488	Soybean	cytosol	42.86	49.25
CDY04139	Canola	cytosol	42.86	46.81
CDY17426	Canola	cytosol, nucleus, plastid	41.56	46.72
CDX70711	Canola	cytosol	17.21	41.73
CDY06213	Canola	cytosol	19.81	34.86
CDX78706	Canola	cytosol	38.31	30.03
CDX74814	Canola	cytosol, plastid	23.7	25.26
CDY65775	Canola	cytosol, plastid	23.38	24.91
CDY24934	Canola	plastid	23.05	24.23
CDY60991	Canola	plastid	22.73	23.89
CDY32798	Canola	plastid	22.08	21.66
CDX94336	Canola	plastid	22.08	21.38
CDY49389	Canola	plastid	22.08	21.38
CDX89337	Canola	plastid	21.75	21.07
CDY42737	Canola	plastid	21.43	20.75
CDX92773	Canola	plastid	22.73	19.89

Protein Annotations

MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	UniProt:A0A078FA97	EnsemblPlants:CDY11340	ProteinID:CDY11340	ProteinID:CDY11340.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005838	EnsemblPlantsGene:GSBRNA2T00049386001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN	InterPro:MPN_RPN7_8
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	InterPro:Rpn11/EIF3F_C
SMART:SM00232	UniParc:UPI0004EE8817	SEG:seg	:	:	:

Description

BnaA03g01760DBnaA03g01760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA97]

Coordinates

chrLK032010:+:827249..829734

Molecular Weight (calculated)

34785.0 Da

IEP (calculated)

6.636

GRAVY (calculated)

-0.103

Length

308 amino acids

Sequence
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSRK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIDGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.