Factsheet for TraesCS2D01G496100.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G372900.1
TraesCS5A01G206600.2
TraesCS5A01G476700.1
TraesCS5B01G204800.1
TraesCS5B01G489600.1
TraesCS5D01G212800.1
TraesCS5D01G490000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05780.1	TraesCS3B01G372900.1	AT3G25860.1	24846764
AT5G05780.1	TraesCS5A01G206600.2	AT3G25860.1	24846764
AT5G05780.1	TraesCS5A01G476700.1	AT3G25860.1	24846764
AT5G05780.1	TraesCS5B01G204800.1	AT3G25860.1	24846764
AT5G05780.1	TraesCS5B01G489600.1	AT3G25860.1	24846764
AT5G05780.1	TraesCS5D01G212800.1	AT3G25860.1	24846764
AT5G05780.1	TraesCS5D01G490000.1	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G524100.2	Wheat	cytosol	100.0	100.0
TraesCS2A01G495800.1	Wheat	golgi, unclear	100.0	100.0
HORVU2Hr1G110590.1	Barley	cytosol	99.35	99.35
EES11600	Sorghum	cytosol	96.13	96.13
Zm00001d001966_P001	Maize	cytosol	96.13	93.42
Bra009133.1-P	Field mustard	cytosol	90.0	90.58
CDX70129	Canola	cytosol, nucleus, vacuole	89.68	90.26
CDX80973	Canola	cytosol, nucleus, vacuole	89.68	90.26
GSMUA_Achr8P20510_001	Banana	cytosol	90.0	90.0
AT5G05780.1	Thale cress	cytosol	89.35	89.94
CDY11340	Canola	extracellular	89.35	89.94
VIT_08s0007g01980.t01	Wine grape	cytosol	89.68	89.68
CDX98863	Canola	cytosol	89.03	89.61
CDY04967	Canola	cytosol	89.03	89.61
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	89.03	89.61
CDY14102	Canola	cytosol	89.03	89.61
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	88.71	89.29
GSMUA_Achr9P25620_001	Banana	cytosol	89.35	89.07
KRH31114	Soybean	endoplasmic reticulum	88.39	88.67
AT3G11270.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	88.39	88.39
KRG97770	Soybean	nucleus	87.74	88.03
PGSC0003DMT400042160	Potato	cytosol	87.74	87.74
Solyc01g008370.2.1	Tomato	nucleus	87.74	87.74
VIT_02s0025g01490.t01	Wine grape	cytosol	87.74	87.74
Os04t0661900-01	Rice	cytosol	47.74	87.06
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	90.32	84.59
HORVU4Hr1G012380.1	Barley	cytosol	20.32	67.02
KRG89488	Soybean	cytosol	42.58	49.25
CDY17426	Canola	cytosol, nucleus, plastid	39.03	44.16
CDY04139	Canola	cytosol	39.68	43.62
Bra017408.1-P	Field mustard	cytosol	40.0	40.26
CDX70711	Canola	cytosol	16.45	40.16
CDY06213	Canola	cytosol	19.35	34.29
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	31.61	32.78
Bra006369.1-P	Field mustard	cytosol	35.81	27.68
CDX78706	Canola	cytosol	34.52	27.23
TraesCS6D01G078000.1	Wheat	plastid	22.9	24.32
TraesCS7D01G240300.1	Wheat	golgi, unclear	20.65	18.99
TraesCS1D01G370500.1	Wheat	cytosol	5.81	3.92

Protein Annotations

EnsemblPlants:TraesCS2D01G496100.2	EnsemblPlantsGene:TraesCS2D01G496100	Gene3D:3.40.140.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005838	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
InterPro:MPN	InterPro:MPN_RPN7_8	InterPro:Rpn11/EIF3F_C	PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	SMART:SM00232	TIGR:cd08062	MapMan:19.2.6.2.2.7	:

Description

No Description!

Coordinates

chr2D:-:592628101..592632039

Molecular Weight (calculated)

34786.1 Da

IEP (calculated)

6.580

GRAVY (calculated)

-0.071

Length

310 amino acids

Sequence
(BLAST)

001: MDVVKAAQLS GRTLEKVVVH PLVLLSIVDH YNRVARDTRK RVVGVLLGTS SRGVVDVTNS YAVPFEEDDK DPRIWFLDHN YHESMFSMFK RINAKEHVVG
101: WYSTGPKLKE NDLDVHALFT NYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVPSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVS
201: SKLAALKGLD ARLTEIRGYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELIKAFAVK TNDMMLVIYL SSLIRSVIAL HNLINNKMLN KEHEKAEDLK
301: PAAVPTAAGS

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.