Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G372900.1 | Wheat | plastid | 94.82 | 96.7 |
| TraesCS5D01G212800.1 | Wheat | plastid | 96.11 | 96.11 |
| HORVU5Hr1G061140.1 | Barley | plastid | 95.46 | 95.46 |
| TraesCS5A01G206600.2 | Wheat | plastid | 90.06 | 89.87 |
| OQU89472 | Sorghum | plastid | 79.91 | 80.61 |
| Zm00001d020426_P001 | Maize | plastid | 78.19 | 79.74 |
| Os09t0408600-01 | Rice | plastid | 80.99 | 74.85 |
| GSMUA_Achr3P07350_001 | Banana | cytosol | 63.93 | 72.73 |
| TraesCS5B01G489600.1 | Wheat | golgi | 74.08 | 72.21 |
| Solyc05g009530.2.1 | Tomato | plastid | 63.71 | 64.27 |
| CDY39183 | Canola | plastid | 65.44 | 64.19 |
| Bra017345.1-P | Field mustard | plastid | 66.31 | 64.09 |
| CDY04184 | Canola | plastid | 66.09 | 63.88 |
| CDX83563 | Canola | plastid | 65.66 | 63.87 |
| AT3G25860.1 | Thale cress | plastid | 66.09 | 63.75 |
| CDY13593 | Canola | plastid | 65.66 | 63.73 |
| Bra025167.1-P | Field mustard | plastid | 65.66 | 63.73 |
| VIT_01s0011g03380.t01 | Wine grape | plastid | 66.74 | 63.32 |
| KRH75381 | Soybean | plastid | 57.88 | 62.76 |
| PGSC0003DMT400033754 | Potato | plastid | 62.2 | 62.61 |
| TraesCS5B01G116300.1 | Wheat | golgi, unclear | 59.83 | 60.35 |
| KRG90801 | Soybean | endoplasmic reticulum, nucleus | 65.66 | 60.08 |
| TraesCS7B01G205500.1 | Wheat | mitochondrion | 26.57 | 27.83 |
| TraesCS6B01G028600.1 | Wheat | mitochondrion | 28.08 | 24.44 |
| TraesCS2B01G053600.1 | Wheat | mitochondrion | 19.01 | 20.61 |
| TraesCS4B01G071300.1 | Wheat | mitochondrion | 19.01 | 20.09 |
Protein Annotations
| InterPro:2-oxoA_DH_lipoyl-BS | InterPro:2-oxoacid_DH_actylTfrase | Gene3D:2.40.50.100 | Gene3D:3.30.559.10 | Gene3D:4.10.320.10 | MapMan:5.1.2.2.2 |
| InterPro:Biotin_lipoyl | InterPro:CAT-like_dom_sf | ncoils:Coil | InterPro:E3-bd_dom_sf | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016740 | GO:GO:0016746 | InterPro:IPR000089 | InterPro:IPR004167 |
| InterPro:IPR023213 | InterPro:IPR036625 | PFAM:PF00198 | PFAM:PF00364 | PFAM:PF02817 | ScanProsite:PS00189 |
| PFscan:PS50968 | PFscan:PS51826 | InterPro:PSBD | PANTHER:PTHR23151 | PANTHER:PTHR23151:SF67 | SUPFAM:SSF47005 |
| SUPFAM:SSF51230 | SUPFAM:SSF52777 | InterPro:Single_hybrid_motif | EnsemblPlantsGene:TraesCS5B01G204800 | EnsemblPlants:TraesCS5B01G204800.1 | TIGR:cd06849 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:373044170..373046634
Molecular Weight (calculated)
48385.7 Da
IEP (calculated)
9.725
GRAVY (calculated)
0.095
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLASLSIY TVPGRAGRAE SVHTPRRRRM AVVRAKVREI FMPALSSTMT EGKIVSWTTA EGDRVSKGDP VVVVESDKAD MDVETFHDGI IAAVLVPAGG
101: TALVGAPIAL LAESEEDVAL AQARAQALSK AQGEETPPPH AAATAPPTVA PALAPVAAPT NGIATPHAKK LAKQHRVDIS NVIGTGLNGR ITAADVEAAA
201: GIQPKPKAAP PPPPAARSAP PAGTPLVAAV RQPAVLPPVP GATAVPFTSM QSAVSRNMVE SLSVPTFRVG YAIKTDKLDA LYEKVKLKGV TKTLLLVKAA
301: GMALAQHPVV NASCRDGKSF SYNSSINIAV AVAIEGGLLT PVLEDVDKSD IYLLAQKWRA LLKKTRMKQL QPNEYSSGTF SLSNLGMFGV DRFDAILPPG
401: QGAIMAVGAS RPTVIADKDG FFSIKNEMLV NVTADHRIIY GADLAAFLQT FAKIVEDPES LTL
101: TALVGAPIAL LAESEEDVAL AQARAQALSK AQGEETPPPH AAATAPPTVA PALAPVAAPT NGIATPHAKK LAKQHRVDIS NVIGTGLNGR ITAADVEAAA
201: GIQPKPKAAP PPPPAARSAP PAGTPLVAAV RQPAVLPPVP GATAVPFTSM QSAVSRNMVE SLSVPTFRVG YAIKTDKLDA LYEKVKLKGV TKTLLLVKAA
301: GMALAQHPVV NASCRDGKSF SYNSSINIAV AVAIEGGLLT PVLEDVDKSD IYLLAQKWRA LLKKTRMKQL QPNEYSSGTF SLSNLGMFGV DRFDAILPPG
401: QGAIMAVGAS RPTVIADKDG FFSIKNEMLV NVTADHRIIY GADLAAFLQT FAKIVEDPES LTL
001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF
Arabidopsis Description
EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.