Factsheet for VIT_01s0011g03380.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g01100.t01
VIT_09s0002g08050.t01
VIT_18s0072g01000.t01
VIT_19s0027g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	VIT_18s0072g01000.t01	AT1G34430.1	21798944
AT3G25860.1	VIT_19s0027g00470.t01	AT1G79070.1	21798944
AT3G25860.1	VIT_01s0010g01100.t01	AT3G25545.1	21798944
AT3G25860.1	VIT_09s0002g08050.t01	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P07350_001	Banana	cytosol	67.83	81.33
CDX83563	Canola	plastid	75.82	77.73
Solyc05g009530.2.1	Tomato	plastid	72.75	77.34
CDY39183	Canola	plastid	73.98	76.48
Bra025167.1-P	Field mustard	plastid	74.59	76.31
PGSC0003DMT400033754	Potato	plastid	71.93	76.3
Bra017345.1-P	Field mustard	plastid	74.8	76.2
CDY04184	Canola	plastid	74.8	76.2
CDY13593	Canola	plastid	74.39	76.1
AT3G25860.1	Thale cress	plastid	74.59	75.83
KRH75381	Soybean	plastid	64.75	74.0
KRG90801	Soybean	endoplasmic reticulum, nucleus	75.2	72.53
TraesCS5B01G489600.1	Wheat	golgi	70.08	72.0
TraesCS5A01G476700.1	Wheat	plastid	69.67	71.73
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	69.06	71.1
EES15031	Sorghum	plastid	69.06	70.95
Zm00001d032224_P001	Maize	plastid	68.44	70.91
Os08t0431300-01	Rice	plastid	67.83	69.68
TraesCS3B01G372900.1	Wheat	plastid	63.11	67.84
OQU89472	Sorghum	plastid	63.73	67.76
TraesCS5D01G212800.1	Wheat	plastid	64.14	67.6
Zm00001d020426_P001	Maize	plastid	62.7	67.4
HORVU5Hr1G061140.1	Barley	plastid	63.93	67.39
TraesCS5B01G204800.1	Wheat	plastid	63.32	66.74
Zm00001d050383_P001	Maize	plastid	68.03	63.6
VIT_18s0072g01000.t01	Wine grape	plastid	61.68	63.1
Os09t0408600-01	Rice	plastid	64.34	62.67
HORVU5Hr1G112850.3	Barley	plastid	67.01	61.01
TraesCS5A01G206600.2	Wheat	plastid	57.38	60.34
VIT_11s0016g01870.t01	Wine grape	mitochondrion	32.58	29.07
VIT_09s0002g01800.t01	Wine grape	mitochondrion	30.94	27.21
VIT_19s0090g00750.t01	Wine grape	cytosol	18.44	22.96
VIT_05s0077g02080.t01	Wine grape	cytosol	20.9	22.03
VIT_13s0074g00150.t01	Wine grape	mitochondrion	27.87	21.38
VIT_10s0116g01480.t01	Wine grape	mitochondrion	18.85	19.45

Protein Annotations

EntrezGene:100261197	wikigene:100261197	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10
Gene3D:4.10.320.10	MapMan:5.1.2.2.2	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	ProteinID:CCB50923	ProteinID:CCB50923.1
InterPro:E3-bd_dom_sf	UniProt:F6HFN8	EMBL:FN595752	GO:GO:0003674	GO:GO:0003824	GO:GO:0004742
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009941	GO:GO:0016020	GO:GO:0016740	GO:GO:0016746	GO:GO:0022626
InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	EntrezGene:LOC100261197	wikigene:LOC100261197
PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826
InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF75	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777
InterPro:Single_hybrid_motif	TIGR:TC63550	TIGR:TC70392	UniParc:UPI00019828C8	ArrayExpress:VIT_01s0011g03380	EnsemblPlantsGene:VIT_01s0011g03380
EnsemblPlants:VIT_01s0011g03380.t01	unigene:Vvi.2467	RefSeq:XP_002282287	RefSeq:XP_002282287.1	SEG:seg	:

Description

Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:F6HFN8]

Coordinates

chr1:+:3061306..3065510

Molecular Weight (calculated)

50181.5 Da

IEP (calculated)

9.504

GRAVY (calculated)

0.152

Length

488 amino acids

Sequence
(BLAST)

001: MASPLLSRVS ISNATAGNTI SFSSSVSNGL LWRRSIAFPD KSSRKVSTVQ AKIREIFMPA LSSTMTEGKI VSWIKSEGDV LSKGESVVVV ESDKADMDVE
101: TFYDGILAAI VVGDGEVAPV GAPIGLLAET EEEIAEAKAK ASKSGSSAPP PPPAPAAASA SPAAPAVAPP KSAASAAVPD GPKKIVATPF AKKLAKQHKV
201: DIGSVVGTGP FGRITPADVE AAAGISPSKS TGVNVVSSVA AAPAPAPVAA AAPKAAASPA PPPIPGSTVV PFTTMQAAVS KNMVESLSVP TFRVGYPVLT
301: DKLDALYEKV KPKGVTMTAL LAKAAAMALA QHPVVNASCK DGKTFTYNSS INIAVAVAIN GGLITPVLQD ADKLDLYLLS QKWKELVEKA RAKQLQPHEY
401: NSGTFTLSNL GMFGVDRFDA ILPPGQGAIM AVGASKPTVV TDKDGFFSVK SKMLVNVTAD HRIIYGADLA AFLQTFAKIV ENPESLTL

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.