Factsheet for VIT_05s0077g02080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G012440.1	Barley	cytosol	55.94	58.73
KRH02272	Soybean	mitochondrion	65.01	58.45
KRH50815	Soybean	mitochondrion	65.01	58.45
AT3G06850.1	Thale cress	mitochondrion, plastid	60.04	57.56
PGSC0003DMT400029466	Potato	mitochondrion	62.63	57.43
Solyc01g066520.2.1	Tomato	plastid	62.42	57.23
CDX74077	Canola	mitochondrion, plastid	58.96	57.11
CDY08029	Canola	mitochondrion	59.4	56.7
TraesCS2D01G073400.1	Wheat	mitochondrion	60.69	55.31
TraesCS2A01G074700.1	Wheat	nucleus	60.48	54.79
Bra001220.1-P	Field mustard	mitochondrion	58.1	54.45
EES02874	Sorghum	mitochondrion	61.12	54.11
Zm00001d040670_P004	Maize	mitochondrion	60.26	53.35
GSMUA_Achr10P...	Banana	mitochondrion	61.12	53.3
VIT_09s0002g01800.t01	Wine grape	mitochondrion	26.57	22.16
VIT_19s0090g00750.t01	Wine grape	cytosol	18.14	21.43
VIT_11s0016g01870.t01	Wine grape	mitochondrion	24.84	21.02
VIT_18s0072g01000.t01	Wine grape	plastid	21.6	20.96
VIT_01s0011g03380.t01	Wine grape	plastid	22.03	20.9
VIT_10s0116g01480.t01	Wine grape	mitochondrion	18.79	18.39
VIT_13s0074g00150.t01	Wine grape	mitochondrion	23.76	17.3

Protein Annotations

KEGG:00280+2.3.1.168	KEGG:00640+2.3.1.168	EntrezGene:100244742	wikigene:100244742	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase
Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:4.2.7.2.2	EMBL:AM479920	InterPro:BCKADH_E2
InterPro:Biotin_lipoyl	ProteinID:CAN68576	ProteinID:CAN68576.1	InterPro:CAT-like_dom_sf	ProteinID:CBI22978	ProteinID:CBI22978.3
UniProt:D7SYC1	InterPro:E3-bd_dom_sf	EMBL:FN595246	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950
GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009605	GO:GO:0009628
GO:GO:0009646	GO:GO:0009744	GO:GO:0009987	GO:GO:0009991	GO:GO:0016407	GO:GO:0016740
GO:GO:0016746	GO:GO:0043617	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625
EntrezGene:LOC100244742	wikigene:LOC100244742	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189
PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR43178	PANTHER:PTHR43178:SF5	SUPFAM:SSF47005
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	TIGR:TC68530	UniParc:UPI0001BE1F17	ArrayExpress:VIT_05s0077g02080
EnsemblPlantsGene:VIT_05s0077g02080	EnsemblPlants:VIT_05s0077g02080.t01	unigene:Vvi.5429	RefSeq:XP_002270598	RefSeq:XP_002270598.2	SEG:seg

Description

Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:D7SYC1]

Coordinates

chr5:-:1602118..1614367

Molecular Weight (calculated)

50870.4 Da

IEP (calculated)

5.603

GRAVY (calculated)

-0.097

Length

463 amino acids

Sequence
(BLAST)

001: MASFSMVNDK LMDLNIPYSI KRSCFSSHAL LDLPASGIVS IPLAQTGEGI AECELLKWFV KEGDQVEEFQ PLCEVQSDKA TIEITSRYKG TVSQIIYVPG
101: DIVKVGESLL KMVVEESQGS NLTSNAPDDM KSMGAEVCDS SIQSSDLRHS NTGGVLATPA VRNLAKQYGV DINHILGTGQ DGRVLKEDVL THAVQKGLCK
201: EPSSLSVNSV EHFQGEEKYS HTLAADGWQY EDKTVPIRGF QRAMIKSMTL AAKIPHFHYV EEINCDALVK LKASFQEENR DPEVKHTFLP FMIKTLSMAL
301: SKYPLLNSCF NEELQEITVK GSHNIGIAMA TPHGLVVPNI KRVQLLSILE ITKELARLQQ LALANNLCPE DISGGTITLS NIGAIGGKFG SPLLNSPEVS
401: IIAIGRLQKV PQFVDDENVY PASIMTVNIG ADHRVLDGAT VARFCNEWKL YIEKPEQLML HMK

Best Arabidopsis Sequence Match ( AT3G06850.2 )
(BLAST)

001: MIARRIWRSH RFLRPFSSSS VCSPPFRVPE YLSQSSSSPA SRPFFVHPPT LMKWGGGSRS WFSNEAMATD SNSGLIDVPL AQTGEGIAEC ELLKWFVKEG
101: DSVEEFQPLC EVQSDKATIE ITSRFKGKVA LISHSPGDII KVGETLVRLA VEDSQDSLLT TDSSEIVTLG GSKQGTENLL GALSTPAVRN LAKDLGIDIN
201: VITGTGKDGR VLKEDVLRFS DQKGFVTDSV SSEHAVIGGD SVSTKASSNF EDKTVPLRGF SRAMVKTMTM ATSVPHFHFV EEINCDSLVE LKQFFKENNT
301: DSTIKHTFLP TLIKSLSMAL TKYPFVNSCF NAESLEIILK GSHNIGVAMA TEHGLVVPNI KNVQSLSLLE ITKELSRLQH LAANNKLNPE DVTGGTITLS
401: NIGAIGGKFG SPLLNLPEVA IIALGRIEKV PKFSKEGTVY PASIMMVNIA ADHRVLDGAT VARFCCQWKE YVEKPELLML QMR

Arabidopsis Description

BCE2Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M7Z1]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.