Factsheet for VIT_18s0072g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02480.t01
VIT_06s0004g04740.t01
VIT_15s0021g00250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34430.1	VIT_01s0026g02480.t01	AT2G47400.1	21798944
AT1G34430.1	VIT_15s0021g00250.t01	AT3G17668.1	21798944
AT1G34430.1	VIT_06s0004g04740.t01	AT3G18140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34962	Soybean	plastid	80.71	82.09
KRG91819	Soybean	endoplasmic reticulum, nucleus	79.87	81.94
CDY03145	Canola	plastid	77.15	80.7
CDY12039	Canola	plastid	75.68	80.22
Bra028057.1-P	Field mustard	plastid	76.31	80.0
AT1G34430.1	Thale cress	plastid	77.36	79.35
TraesCS5D01G126000.1	Wheat	cytosol	65.62	76.72
Zm00001d023606_P005	Maize	plastid	71.7	74.84
Solyc11g017250.1.1	Tomato	plastid	73.38	74.79
PGSC0003DMT400023831	Potato	plastid	72.75	74.78
OQU78843	Sorghum	plastid	70.86	73.8
TraesCS5B01G116300.1	Wheat	golgi, unclear	70.02	72.77
TraesCS5A01G119600.1	Wheat	plastid	69.39	72.59
Os12t0182200-01	Rice	plastid	70.86	72.38
GSMUA_Achr3P17420_001	Banana	cytosol	35.01	67.07
VIT_01s0011g03380.t01	Wine grape	plastid	63.1	61.68
Zm00001d041839_P001	Maize	plastid	71.28	57.34
HORVU5Hr1G038090.3	Barley	plastid	49.69	54.99
VIT_11s0016g01870.t01	Wine grape	mitochondrion	31.87	27.79
VIT_09s0002g01800.t01	Wine grape	mitochondrion	31.87	27.39
VIT_19s0090g00750.t01	Wine grape	cytosol	18.24	22.19
VIT_05s0077g02080.t01	Wine grape	cytosol	20.96	21.6
VIT_13s0074g00150.t01	Wine grape	mitochondrion	28.51	21.38
VIT_10s0116g01480.t01	Wine grape	mitochondrion	18.24	18.39
TraesCS5D01G125900.1	Wheat	plastid	2.1	3.28

Protein Annotations

EntrezGene:100245266	wikigene:100245266	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10
Gene3D:4.10.320.10	MapMan:5.1.2.2.2	EMBL:AM484577	InterPro:Biotin_lipoyl	ProteinID:CAN68729	ProteinID:CAN68729.1
InterPro:CAT-like_dom_sf	ProteinID:CCB44848	ProteinID:CCB44848.1	ncoils:Coil	InterPro:E3-bd_dom_sf	UniProt:F6GY10
EMBL:FN594968	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0005886
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020
GO:GO:0016740	GO:GO:0016746	GO:GO:0019904	GO:GO:0022626	InterPro:IPR000089	InterPro:IPR004167
InterPro:IPR023213	InterPro:IPR036625	EntrezGene:LOC100245266	wikigene:LOC100245266	PFAM:PF00198	PFAM:PF00364
PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151
PANTHER:PTHR23151:SF61	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI00019855A0
ArrayExpress:VIT_18s0072g01000	EnsemblPlantsGene:VIT_18s0072g01000	EnsemblPlants:VIT_18s0072g01000.t01	unigene:Vvi.23248	RefSeq:XP_002271286	RefSeq:XP_002271286.1
SEG:seg	:	:	:	:	:

Description

Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:F6GY10]

Coordinates

chr18:-:20442980..20449207

Molecular Weight (calculated)

49590.5 Da

IEP (calculated)

7.738

GRAVY (calculated)

0.029

Length

477 amino acids

Sequence
(BLAST)

001: MSQLLHLGTS FVPSSSSALR RNPTSSPAIH ISGNKRTTIQ AKIREIFMPA LSSTMTEGKI VSWVKSEGDK LSKGESVVVV ESDKADMDVE TFYDGYLAAI
101: MVEEGGVAAV GSAIALLAET EDEIAEARSK ANTSPSSSPP SPAAAAAAPE ESVGAPEKAA PVKAAATVTV AKMASSVHPA SEGGKRIVAS PYAKKLAKEL
201: NVDLGNVVGS GPMGRIVAKD VEAAAAAGVS VAAEDPKPSP SSAPVKAPAS TGIELGTVVP FTTMQGAVSR NMVDSLTVPT FRVGYTITTD ALDALYKKIK
301: SKGVTMTALL AKATALALVK HPVVNSSCRD GKSFTYNSSI NIAVAVAIDG GLITPVLQDA DKVDIYSLSR KWKELVDKAR AKQLQPHEYN TGTFTLSNLG
401: MFGVDRFDAI LPPGTGAIMA VGASEPTVVA TKDGRIGMKS QMQVNVTADH RVIYGADLAS FLQTLAKIIE DPKDLTF

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.