Factsheet for PGSC0003DMT400023831

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018798
PGSC0003DMT400023336
PGSC0003DMT400040427

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34430.1	PGSC0003DMT400018798	AT2G47400.1	21798944
AT1G34430.1	PGSC0003DMT400023336	AT2G47400.1	21798944
AT1G34430.1	PGSC0003DMT400040427	AT3G17668.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g017250.1.1	Tomato	plastid	97.84	97.01
GSMUA_Achr9P08540_001	Banana	cytosol	45.69	88.7
KRG91819	Soybean	endoplasmic reticulum, nucleus	75.0	74.84
CDY12039	Canola	plastid	71.98	74.22
KRH34962	Soybean	plastid	74.57	73.77
CDY03145	Canola	plastid	72.41	73.68
Bra028057.1-P	Field mustard	plastid	72.2	73.63
AT1G34430.1	Thale cress	plastid	73.71	73.55
TraesCS5D01G126000.1	Wheat	cytosol	64.44	73.28
VIT_18s0072g01000.t01	Wine grape	plastid	74.78	72.75
OQU78843	Sorghum	plastid	70.04	70.96
Zm00001d023606_P005	Maize	plastid	69.83	70.9
Os12t0182200-01	Rice	plastid	70.69	70.24
TraesCS5A01G119600.1	Wheat	plastid	68.97	70.18
TraesCS5B01G116300.1	Wheat	golgi, unclear	68.75	69.5
PGSC0003DMT400033754	Potato	plastid	61.42	61.96
GSMUA_Achr9P08550_001	Banana	plastid	18.1	60.0
Zm00001d041839_P001	Maize	plastid	69.83	54.64
HORVU5Hr1G038090.3	Barley	plastid	49.57	53.36
PGSC0003DMT400048225	Potato	mitochondrion	31.9	26.81
PGSC0003DMT400029466	Potato	mitochondrion	23.28	21.39
PGSC0003DMT400071652	Potato	mitochondrion	20.26	19.96
PGSC0003DMT400057449	Potato	mitochondrion	18.53	18.38
CDY34925	Canola	mitochondrion	9.27	16.73
Bra040295.1-P	Field mustard	mitochondrion	9.27	16.73
TraesCS5D01G125900.1	Wheat	plastid	2.37	3.61
CDY69187	Canola	cytosol, nucleus	0.0	0.0
CDY17299	Canola	cytosol, plastid	0.0	0.0

Protein Annotations

EntrezGene:102589456	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10
MapMan:5.1.2.2.2	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016740	GO:GO:0016746	GO:GO:0019904
GO:GO:0022626	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	UniProt:M1AJ16
PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	EnsemblPlantsGene:PGSC0003DMG400009219	PGSC:PGSC0003DMG400009219	EnsemblPlants:PGSC0003DMT400023831
ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF61
SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI00029670B8	RefSeq:XP_006351156.1
SEG:seg	:	:	:	:	:

Description

Pyruvate dehydrogenase E2 subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400009219]

Coordinates

chr11:-:8815827..8824079

Molecular Weight (calculated)

48499.4 Da

IEP (calculated)

8.806

GRAVY (calculated)

0.054

Length

464 amino acids

Sequence
(BLAST)

001: MSHLLQSTFI PTTPTTLRRR SVFPTTHLRK THVVESKIRE IFMPALSSTM TEGKIISWMK TEGDKLAKGE SVVVVESDKA DMDVESFYDG YLASIIVPEG
101: SSAPVGSPIA LLAESEDEIS LAKSKTPTPT STSTPAAAAA VTEEVSTVAA AVTVTSSSDA GPVKMASSIH PASEGGKRVV ASPYAKKLAK ELGLDLRGVV
201: GSGPNGRIVA KDVEAAAGSA PIGVAAAAKP SGGAPAAPAV ELGTTVPFTT MQNAVSRNMV ESLAVPTFRV GYTITTNALD ALYKKVKSKG VTMTALLAKA
301: TALALVKHPV VNSSCRDGKS FTYNSSINIA VAVAIDGGLI TPVLQDADKV DLYSLSRKWK ELVDKARAKQ LQPHEYTTGT FTLSNLGMFG VDRFDAILPP
401: GTGAIMAVGA SQPTLVGTKD GQIGMKNQMQ VNVTADHRVI YGAELAAFLQ TLAQIIEDPK DLTL

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.