Factsheet for PGSC0003DMT400057449

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	PGSC0003DMT400001405	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064800.2.1	Tomato	extracellular, nucleus	97.22	97.22
PGSC0003DMT400071652	Potato	mitochondrion	82.48	81.95
VIT_19s0090g00750.t01	Wine grape	cytosol	63.68	76.02
Bra035551.1-P	Field mustard	mitochondrion	68.59	73.79
GSMUA_AchrUn_...	Banana	mitochondrion	70.09	72.57
GSMUA_Achr3P18670_001	Banana	mitochondrion	70.09	72.57
VIT_10s0116g01480.t01	Wine grape	mitochondrion	72.65	71.88
CDY19918	Canola	mitochondrion	71.15	71.77
CDY06613	Canola	mitochondrion	71.15	71.46
KRH73773	Soybean	mitochondrion	70.73	71.34
CDY20790	Canola	mitochondrion	70.51	70.97
KRH14369	Soybean	nucleus	70.09	70.69
AT5G55070.1	Thale cress	mitochondrion	70.09	70.69
CDY17300	Canola	mitochondrion	70.3	70.6
Bra002934.1-P	Field mustard	mitochondrion	70.3	70.6
AT4G26910.1	Thale cress	mitochondrion	69.87	70.47
Os04t0394200-01	Rice	mitochondrion	65.6	69.77
TraesCS4D01G070200.1	Wheat	mitochondrion	65.17	69.63
Os02t0514700-00	Rice	mitochondrion	59.19	69.6
TraesCS4B01G071300.1	Wheat	mitochondrion	64.96	69.41
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	64.74	69.18
TraesCS2D01G039500.2	Wheat	mitochondrion	64.53	67.87
Zm00001d025258_P009	Maize	mitochondrion	64.53	67.71
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	64.32	67.64
GSMUA_Achr9P01190_001	Banana	cytosol	71.79	67.61
TraesCS2B01G053600.1	Wheat	mitochondrion	61.54	67.45
CDY21016	Canola	mitochondrion, plastid	68.16	67.02
Bra016809.1-P	Field mustard	mitochondrion, plastid	67.95	66.95
CDY31217	Canola	mitochondrion, plastid	68.16	66.32
Bra028992.1-P	Field mustard	mitochondrion	69.87	66.19
OQU93042	Sorghum	mitochondrion	65.17	65.31
Zm00001d003923_P002	Maize	mitochondrion	64.53	63.85
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	64.74	63.66
CDY12012	Canola	plastid	69.87	62.64
CDY36727	Canola	plastid	70.3	61.5
PGSC0003DMT400048225	Potato	mitochondrion	25.64	21.74
PGSC0003DMT400029466	Potato	mitochondrion	20.09	18.61
PGSC0003DMT400023831	Potato	plastid	18.38	18.53
Os01t0314100-01	Rice	mitochondrion	20.51	18.36
PGSC0003DMT400033754	Potato	plastid	17.95	18.26
Os01t0314000-01	Rice	cytosol	0.85	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	EntrezGene:102604382	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004149	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746
GO:GO:0045252	InterPro:IPR000089	InterPro:IPR023213	UniProt:M1C130	PFAM:PF00198	PFAM:PF00364
EnsemblPlantsGene:PGSC0003DMG400022308	PGSC:PGSC0003DMG400022308	EnsemblPlants:PGSC0003DMT400057449	ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416
PANTHER:PTHR43416:SF5	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347
UniParc:UPI0002960CAB	RefSeq:XP_006346199.1	SEG:seg	:	:	:

Description

Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400022308]

Coordinates

chr7:+:54981270..54987717

Molecular Weight (calculated)

51158.9 Da

IEP (calculated)

9.447

GRAVY (calculated)

-0.229

Length

468 amino acids

Sequence
(BLAST)

001: MLGVLRRKAI SSASFTSCVR KSLHTVRPSV CKSRIPSAAA EEISLLTRQC GHVRNFNQLV LPGCSSNLRP ERAVTSLCSS PILSNWSRTF CANSGDTVDA
101: VVPYMGESIS DGTLAKFLKN VGDRVEIDEP IAQIETDKVT IDVTSPEAGV IQKFVAKEGD TVEPGNKVAI ISKSGEGVEH VVPSEKSSEK VAPPAEDKKE
201: EKAKPQVEKT PVKEKPKGSS PPPPKRSPTE LQLPPKERER RVPMTRLRKR VATRLKDSQN TFALLTTFNE VDMTNLMKLR SDYKDAFVEK HGVKLGFMSG
301: FVKAAISALQ NQPIVNAVID GDDIIYRDYI DISIAVGTPK GLVVPVIRNA EQMNFAEIEK TINTLAKKAN DGSISIDEMA GGSFTISNGG VYGSLISTPI
401: INPPQSAILG MHSIVSRPMV VGGNIVPRPM MYIALTYDHR LIDGREAVFF LRRIKDVVED PRRLLLDV

Best Arabidopsis Sequence Match ( AT4G26910.2 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PGNSGISRSA SLVSSTLQRW VRPFSAETGD TVEAVVPHMG
101: ESITDGTLAT FLKKPGERVQ ADEAIAQIET DKVTIDIASP ASGVIQEFLV NEGDTVEPGT KVAIISKSED TASQVTPSQK IPETTDTKPS PPAEDKQKPR
201: VESAPVAEKP KAPSSPPPPK QSAKEPQLPP KERERRVPMT RLRKRVATRL KDSQNTFALL TTFNEVDMTN LMKLRSQYKD AFYEKHGVKL GLMSGFIKAA
301: VSALQHQPVV NAVIDGDDII YRDYVDISIA VGTSKGLVVP VIRGADKMNF AEIEKTINSL AKKANEGTIS IDEMAGGSFT VSNGGVYGSL ISTPIINPPQ
401: SAILGMHSIV SRPMVVGGSV VPRPMMYVAL TYDHRLIDGR EAVYFLRRVK DVVEDPQRLL LDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.