Factsheet for GSMUA_AchrUn_randomP19630_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P09630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT4G26910.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P18670_001	Banana	mitochondrion	87.17	87.17
Solyc12g005080.1.1	Tomato	nucleus	65.27	79.73
VIT_19s0090g00750.t01	Wine grape	cytosol	66.15	76.28
GSMUA_Achr9P01190_001	Banana	cytosol	83.41	75.86
VIT_10s0116g01480.t01	Wine grape	mitochondrion	74.78	71.46
Solyc07g064800.2.1	Tomato	extracellular, nucleus	72.79	70.3
PGSC0003DMT400057449	Potato	mitochondrion	72.57	70.09
PGSC0003DMT400071652	Potato	mitochondrion	73.01	70.06
Bra035551.1-P	Field mustard	mitochondrion	67.26	69.89
AT4G26910.1	Thale cress	mitochondrion	69.03	67.24
KRH14369	Soybean	nucleus	69.03	67.24
KRH73773	Soybean	mitochondrion	69.03	67.24
CDY17300	Canola	mitochondrion	69.03	66.95
Bra002934.1-P	Field mustard	mitochondrion	69.03	66.95
CDY06613	Canola	mitochondrion	68.81	66.74
CDY20790	Canola	mitochondrion	68.58	66.67
AT5G55070.1	Thale cress	mitochondrion	68.14	66.38
CDY19918	Canola	mitochondrion	68.14	66.38
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	14.82	66.34
CDY21016	Canola	mitochondrion, plastid	67.04	63.66
Bra016809.1-P	Field mustard	mitochondrion, plastid	66.81	63.58
CDY31217	Canola	mitochondrion, plastid	67.48	63.41
Bra028992.1-P	Field mustard	mitochondrion	68.58	62.75
CDY12012	Canola	plastid	69.25	59.96
CDY36727	Canola	plastid	68.58	57.94
GSMUA_AchrUn_...	Banana	mitochondrion	24.78	22.63
GSMUA_Achr9P08540_001	Banana	cytosol	11.95	22.59
GSMUA_Achr3P07350_001	Banana	cytosol	19.03	21.13
GSMUA_Achr9P08550_001	Banana	plastid	6.42	20.71
GSMUA_Achr3P17420_001	Banana	cytosol	10.84	19.68
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	26.33	18.74
GSMUA_Achr10P...	Banana	mitochondrion	21.24	18.08

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004149	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746
GO:GO:0045252	EnsemblPlantsGene:GSMUA_AchrUn_randomG19630_001	EnsemblPlants:GSMUA_AchrUn_randomP19630_001	EnsemblPlants:GSMUA_AchrUn_randomT19630_001	InterPro:IPR000089	InterPro:IPR023213
UniProt:M0UAM2	PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416
PANTHER:PTHR43416:SF5	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347
UniParc:UPI000295006E	SEG:seg	:	:	:	:

Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG19630_001]

Coordinates

chrchrUn_random:-:94520475..94524362

Molecular Weight (calculated)

49348.0 Da

IEP (calculated)

9.771

GRAVY (calculated)

-0.214

Length

452 amino acids

Sequence
(BLAST)

001: MASAVIRLVR RPAAALLIAR SCRHVRQLSH HMLPGGLVCS KPARELTMLL PRASPYQMWS RSFASENGDL VDAVVPFMGE SITDGTLATF LKKPGDRVEV
101: DEPIAQIETD KVTIDVNSPE AGIIQKFVAK EGDTVTPGTK VAVISKSYPS DTHVAPSDDK VVKDAQPPSP PTGAPQPTPP TEKIDKQVLK EEGSTKEKPK
201: VPSAATLPKT SPSEPQLPPK ERERRVPMPR LRKRVATRLK DSQNTFAMLT TFNEVDMTNL MKLRSEYKDA FVEKHGVKLG LMSGFVKAAV SGLQNQPIIN
301: AVIDGDDIIY RDYVDISIAV GTPKGLVVPV IRNAGRLNFA GIEKEINNLA KKANNGTISI DEMAGGTFTI SNGGVYGSLL STPIINPPQS AILGMHSIVS
401: RPMVVDGNII PRPMMYVALT YDHRLIDGRE AVFFLRRIKD VVEDPRRLLL DL

Best Arabidopsis Sequence Match ( AT4G26910.2 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PGNSGISRSA SLVSSTLQRW VRPFSAETGD TVEAVVPHMG
101: ESITDGTLAT FLKKPGERVQ ADEAIAQIET DKVTIDIASP ASGVIQEFLV NEGDTVEPGT KVAIISKSED TASQVTPSQK IPETTDTKPS PPAEDKQKPR
201: VESAPVAEKP KAPSSPPPPK QSAKEPQLPP KERERRVPMT RLRKRVATRL KDSQNTFALL TTFNEVDMTN LMKLRSQYKD AFYEKHGVKL GLMSGFIKAA
301: VSALQHQPVV NAVIDGDDII YRDYVDISIA VGTSKGLVVP VIRGADKMNF AEIEKTINSL AKKANEGTIS IDEMAGGSFT VSNGGVYGSL ISTPIINPPQ
401: SAILGMHSIV SRPMVVGGSV VPRPMMYVAL TYDHRLIDGR EAVYFLRRVK DVVEDPQRLL LDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.