Factsheet for GSMUA_Achr9P01190_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P09630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT4G26910.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	75.86	83.41
GSMUA_Achr3P18670_001	Banana	mitochondrion	74.25	81.64
Solyc12g005080.1.1	Tomato	nucleus	59.56	80.0
VIT_19s0090g00750.t01	Wine grape	cytosol	59.76	75.77
Solyc07g064800.2.1	Tomato	extracellular, nucleus	68.01	72.22
VIT_10s0116g01480.t01	Wine grape	mitochondrion	68.61	72.09
PGSC0003DMT400057449	Potato	mitochondrion	67.61	71.79
PGSC0003DMT400071652	Potato	mitochondrion	67.4	71.13
KRH73773	Soybean	mitochondrion	65.79	70.47
Bra035551.1-P	Field mustard	mitochondrion	61.37	70.11
KRH14369	Soybean	nucleus	65.19	69.83
Bra002934.1-P	Field mustard	mitochondrion	63.98	68.24
CDY17300	Canola	mitochondrion	63.98	68.24
CDY19918	Canola	mitochondrion	63.58	68.1
AT5G55070.1	Thale cress	mitochondrion	63.18	67.67
AT4G26910.1	Thale cress	mitochondrion	63.18	67.67
CDY06613	Canola	mitochondrion	63.38	67.6
CDY20790	Canola	mitochondrion	62.98	67.31
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	13.28	65.35
CDY21016	Canola	mitochondrion, plastid	61.57	64.29
CDY31217	Canola	mitochondrion, plastid	62.17	64.24
Bra016809.1-P	Field mustard	mitochondrion, plastid	61.37	64.21
Bra028992.1-P	Field mustard	mitochondrion	63.18	63.56
CDY12012	Canola	plastid	63.38	60.34
CDY36727	Canola	plastid	63.18	58.69
GSMUA_Achr9P08540_001	Banana	cytosol	11.27	23.43
GSMUA_AchrUn_...	Banana	mitochondrion	21.73	21.82
GSMUA_Achr3P07350_001	Banana	cytosol	17.3	21.13
GSMUA_Achr3P17420_001	Banana	cytosol	10.26	20.48
GSMUA_Achr9P08550_001	Banana	plastid	5.63	20.0
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	24.95	19.53
GSMUA_Achr10P...	Banana	mitochondrion	18.71	17.51

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252
EnsemblPlantsGene:GSMUA_Achr9G01190_001	EnsemblPlants:GSMUA_Achr9P01190_001	EnsemblPlants:GSMUA_Achr9T01190_001	InterPro:IPR000089	InterPro:IPR023213	UniProt:M0TWH6
PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347	UniParc:UPI0002954C9A
SEG:seg	:	:	:	:	:

Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr9G01190_001]

Coordinates

chr9:-:916815..928562

Molecular Weight (calculated)

54795.9 Da

IEP (calculated)

10.231

GRAVY (calculated)

-0.223

Length

497 amino acids

Sequence
(BLAST)

001: MLTPSKRKER KPREETLKIS AKIRFIPRLI SFPCLSNVKN DIVLRPPCFV SDPSEMASNL ARRMIRRPPA TLFLLRSNGH VRHFSHQILL GGSICAKPMR
101: EATTFLPRAS SYLLWSRSFA SESGDLVDAV VPFMGESITD GTLATFLKKP GDRVEVDEPI AQVETDKVTI DVASPEAGII QKFIAKEGDT VTPGTKVAVI
201: SKSAPADTHV APSDEKVGKD TTSPAKKENI NKQMPKVEAP IKEKPKTPSL PPPKASPSEP QLPPKERERR VPMPRLRKRV ATRLKDSQNT FAMLTTFNEV
301: DMTNLMKLRS DYKDAFVEKH GVKLGLMSGF VKAAVSGLQN QPIINAVIDG DDIIYRDYID VSIAVGTPKG LVVPVIRNAD RMNFAEIEKE INTLAKKASN
401: GTISIDEMAG GTFTISNGGV YGSLLSTPII NPPQSAILGM HSIVSRPMVV GGNIVLRPMM YVALTYDHRL IDGREAVFFL RRIKDVVEDP RRLLLDL

Best Arabidopsis Sequence Match ( AT4G26910.2 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PGNSGISRSA SLVSSTLQRW VRPFSAETGD TVEAVVPHMG
101: ESITDGTLAT FLKKPGERVQ ADEAIAQIET DKVTIDIASP ASGVIQEFLV NEGDTVEPGT KVAIISKSED TASQVTPSQK IPETTDTKPS PPAEDKQKPR
201: VESAPVAEKP KAPSSPPPPK QSAKEPQLPP KERERRVPMT RLRKRVATRL KDSQNTFALL TTFNEVDMTN LMKLRSQYKD AFYEKHGVKL GLMSGFIKAA
301: VSALQHQPVV NAVIDGDDII YRDYVDISIA VGTSKGLVVP VIRGADKMNF AEIEKTINSL AKKANEGTIS IDEMAGGSFT VSNGGVYGSL ISTPIINPPQ
401: SAILGMHSIV SRPMVVGGSV VPRPMMYVAL TYDHRLIDGR EAVYFLRRVK DVVEDPQRLL LDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.