Factsheet for Solyc12g005080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	Solyc02g086840.2.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071652	Potato	mitochondrion	97.84	76.86
VIT_19s0090g00750.t01	Wine grape	cytosol	77.03	72.7
Solyc07g064800.2.1	Tomato	extracellular, nucleus	85.95	67.95
Os02t0514700-00	Rice	mitochondrion	72.7	67.59
Bra035551.1-P	Field mustard	mitochondrion	78.92	67.13
GSMUA_AchrUn_...	Banana	mitochondrion	79.73	65.27
Os04t0394200-01	Rice	mitochondrion	77.57	65.23
VIT_10s0116g01480.t01	Wine grape	mitochondrion	82.97	64.9
GSMUA_Achr3P18670_001	Banana	mitochondrion	79.19	64.82
TraesCS4D01G070200.1	Wheat	mitochondrion	75.68	63.93
TraesCS4B01G071300.1	Wheat	mitochondrion	75.68	63.93
TraesCS2D01G039500.2	Wheat	mitochondrion	76.76	63.82
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	75.41	63.7
Zm00001d025258_P009	Maize	mitochondrion	76.76	63.68
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	76.49	63.6
AT5G55070.1	Thale cress	mitochondrion	79.73	63.58
CDY06613	Canola	mitochondrion	79.73	63.3
CDY20790	Canola	mitochondrion	79.46	63.23
TraesCS2B01G053600.1	Wheat	mitochondrion	72.7	63.0
CDY19918	Canola	mitochondrion	78.92	62.93
Bra002934.1-P	Field mustard	mitochondrion	78.92	62.66
CDY17300	Canola	mitochondrion	78.92	62.66
AT4G26910.1	Thale cress	mitochondrion	78.38	62.5
CDY21016	Canola	mitochondrion, plastid	79.46	61.76
Bra016809.1-P	Field mustard	mitochondrion, plastid	79.19	61.68
KRH14369	Soybean	nucleus	77.3	61.64
KRH73773	Soybean	mitochondrion	77.3	61.64
CDY31217	Canola	mitochondrion, plastid	79.46	61.12
OQU93042	Sorghum	mitochondrion	77.03	61.03
GSMUA_Achr9P01190_001	Banana	cytosol	80.0	59.56
Zm00001d003923_P002	Maize	mitochondrion	75.68	59.2
Bra028992.1-P	Field mustard	mitochondrion	78.92	59.11
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	75.41	58.61
CDY12012	Canola	plastid	79.19	56.13
CDY36727	Canola	plastid	79.46	54.95
Solyc07g006790.2.1	Tomato	plastid	29.19	19.53
Solyc11g017250.1.1	Tomato	plastid	22.7	17.95
Solyc05g009530.2.1	Tomato	plastid	22.16	17.86
Solyc01g066520.2.1	Tomato	plastid	23.24	17.03
Solyc11g007720.1.1	Tomato	nucleus, unclear	28.38	16.3
Os01t0314100-01	Rice	mitochondrion	20.27	14.34
Os01t0314000-01	Rice	cytosol	1.08	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252
InterPro:IPR000089	InterPro:IPR023213	UniProt:K4DB46	PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189
PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif
EnsemblPlantsGene:Solyc12g005080.1	EnsemblPlants:Solyc12g005080.1.1	InterPro:SucB	TIGRFAMs:TIGR01347	UniParc:UPI000276A16C	SEG:seg

Description

No Description!

Coordinates

chr12:+:38442..41171

Molecular Weight (calculated)

40543.1 Da

IEP (calculated)

6.990

GRAVY (calculated)

-0.251

Length

370 amino acids

Sequence
(BLAST)

001: MGESISDGTL AKLLKNPGDK VEVDEPIAQI ETDKVTIDVT SPEAGVIQKF VAKEGDTVEP GFKVAIISKS GEGVESVDHV APSEKPSEKE ALKPTSPIQE
101: KKVEEVKSKL EVAPVKENSK ATSPPPKRSA TEPQLPPKER ERRVPMTRLR KRVATRLKDS QNTFALLTTF NEVDMTNLMK LRSEYKDTFV EKHGVKLGLM
201: SGFVKAAVSA LQNQPIVNAV IDGDDIIYRD YVDISIAVGT PKGLVVPVLR DVDRMNFAEI EKTINELAKK ATNGTISIDE MAGGSFTISN GGVYGSLLST
301: PIINPPQSAI LGMHSIVNRP MVVGGVIVSR PMMYIALTYD HRLIDGREAV YFLRRIKDVV EDPRRLLLDV

Best Arabidopsis Sequence Match ( AT5G55070.1 )
(BLAST)

001: MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC PGCPDCSRTI INGYQGTALQ RWVRPFSSDS GDVVEAVVPH
101: MGESITDGTL AAFLKKPGDR VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS EKAPEKPAPK PSPPAEKPKV
201: ESTKVAEKPK APSPPPPPPS KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFLEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRDADKMN FADIEKTING LAKKATEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.