CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21016	Canola	mitochondrion, plastid	95.01	96.01
Bra016809.1-P	Field mustard	mitochondrion, plastid	94.59	95.79
Solyc12g005080.1.1	Tomato	nucleus	61.12	79.46
VIT_19s0090g00750.t01	Wine grape	cytosol	58.21	71.43
VIT_10s0116g01480.t01	Wine grape	mitochondrion	69.02	70.19
CDY17300	Canola	mitochondrion	67.57	69.74
CDY19918	Canola	mitochondrion	66.74	69.18
PGSC0003DMT400071652	Potato	mitochondrion	67.36	68.79
CDY20790	Canola	mitochondrion	66.32	68.6
Solyc07g064800.2.1	Tomato	extracellular, nucleus	66.53	68.38
CDY06613	Canola	mitochondrion	66.11	68.24
PGSC0003DMT400057449	Potato	mitochondrion	66.32	68.16
GSMUA_AchrUn_...	Banana	mitochondrion	63.41	67.48
Os02t0514700-00	Rice	mitochondrion	55.72	67.34
GSMUA_Achr3P18670_001	Banana	mitochondrion	63.2	67.26
KRH14369	Soybean	nucleus	64.03	66.38
KRH73773	Soybean	mitochondrion	64.03	66.38
TraesCS4D01G070200.1	Wheat	mitochondrion	59.46	65.3
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	59.46	65.3
Os04t0394200-01	Rice	mitochondrion	59.67	65.23
TraesCS4B01G071300.1	Wheat	mitochondrion	59.25	65.07
Zm00001d025258_P009	Maize	mitochondrion	59.88	64.57
TraesCS2D01G039500.2	Wheat	mitochondrion	59.04	63.82
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	58.84	63.6
TraesCS2B01G053600.1	Wheat	mitochondrion	55.93	63.0
GSMUA_Achr9P01190_001	Banana	cytosol	64.24	62.17
OQU93042	Sorghum	mitochondrion	59.67	61.46
CDY12012	Canola	plastid	65.9	60.73
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	59.46	60.08
Zm00001d003923_P002	Maize	mitochondrion	59.04	60.04
CDY36727	Canola	plastid	66.32	59.63
CDX73652	Canola	mitochondrion	12.47	32.09
CDY55206	Canola	mitochondrion	24.74	23.24
CDX97529	Canola	mitochondrion	25.99	22.24
CDX82504	Canola	plastid	24.74	22.12
CDX75740	Canola	mitochondrion, plastid	25.78	22.1
CDY23198	Canola	mitochondrion	8.32	22.1
CDY33075	Canola	mitochondrion, plastid	25.16	21.8
CDX74077	Canola	mitochondrion, plastid	21.21	21.34
CDY24058	Canola	mitochondrion	24.53	21.26
CDY08029	Canola	mitochondrion	21.0	20.82
CDX95323	Canola	mitochondrion	26.82	20.12
CDX83563	Canola	plastid	19.54	19.75
CDY13593	Canola	plastid	19.54	19.71
CDY39183	Canola	plastid	19.33	19.7
CDY04184	Canola	plastid	19.54	19.62
CDY03145	Canola	plastid	18.5	19.52
CDY12039	Canola	plastid	17.46	18.67
CDY23199	Canola	mitochondrion, plastid	26.61	18.58
Os01t0314100-01	Rice	mitochondrion	19.13	17.59
CDY34925	Canola	mitochondrion	6.24	11.67
CDY69187	Canola	cytosol, nucleus	1.25	0.95
CDY17299	Canola	cytosol, plastid	1.25	0.9
Os01t0314000-01	Rice	cytosol	0.83	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	GO:A0A078H151	UniProt:A0A078H151	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EnsemblPlants:CDY31217
ProteinID:CDY31217	ProteinID:CDY31217.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252
EnsemblPlantsGene:GSBRNA2T00047347001	InterPro:IPR000089	InterPro:IPR023213	PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189
PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	MetaCyc:PWY-5084	SUPFAM:SSF51230	SUPFAM:SSF52777
InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347	UniPathway:UPA00868	UniParc:UPI0004EDBE55	SEG:seg

Description

BnaC08g15120DBnaC08g15120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H151]

Coordinates

chrLK032269:-:32934..35658

Molecular Weight (calculated)

52335.3 Da

IEP (calculated)

9.732

GRAVY (calculated)

-0.251

Length

481 amino acids

Sequence
(BLAST)

001: MAIWSIVRRK VVNGCNSSYF SSIIGKSWKS TSAKASHPRY YGALSKETSV FVRGSRVVVN AVSLPSYLGS SLSSNAIMSR VTLPCIQTFN TSIRLFSSDE
101: GGSVDAVVPY MGESISDGTL ATILKKPGDR VEADEPIAQI ETDKVTIDVS SPTAGTIEKI VAKEGDTVEP GFKIAVISKS SGAATKVEDS EKKPEESKPE
201: KKEEKPKPVA ESPPSPKVET SPPKEKPRAP PPPPPASGAS PREPQLPPKD RERRVPMTRL RKRVATRLKD SQNTFALLTT FNEVDMTNLM KLRSEYKDAF
301: LEKHGVKLGL MSGFIKGAIS ALQNQPVVNA VIDGEDIIYR DYVDISIAVG TPKGLVVPVL RNVEQMNFAE IEKEINRLAK KATAGTISID EMAGGTFTIS
401: NGGVYGSLLS TPIINPPQSA ILGMHSIVNR PMVVGGEVMS RPMMYIALTY DHRLIDGREA VLFLRRIKDV VEDPRRLLLD I

Best Arabidopsis Sequence Match ( AT4G26910.1 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PAGNSGISRS ASLVSSTLQR WVRPFSAETG DTVEAVVPHM
101: GESITDGTLA TFLKKPGERV QADEAIAQIE TDKVTIDIAS PASGVIQEFL VNEGDTVEPG TKVAIISKSE DTASQVTPSQ KIPETTDTKP SPPAEDKQKP
201: RVESAPVAEK PKAPSSPPPP KQSAKEPQLP PKERERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFYEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRGADKMN FAEIEKTINS LAKKANEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VSRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRV KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.