CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75740	mitochondrion
CDX82504	mitochondrion
CDX97529	mitochondrion
CDY55206	mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13930.1	CDX75740	AT3G13930.1	24846799
AT3G13930.1	CDX82504	AT3G13930.1	24846799
AT3G13930.1	CDX97529	AT3G13930.1	24846799
AT3G13930.1	CDY55206	AT3G13930.1	24846799

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82504	Canola	plastid	92.51	96.47
Bra001531.1-P	Field mustard	mitochondrion, plastid	77.54	93.35
CDX97529	Canola	mitochondrion	91.27	91.1
CDY55206	Canola	mitochondrion	82.89	90.82
AT3G13930.1	Thale cress	mitochondrion	85.38	88.87
CDY33075	Canola	mitochondrion, plastid	76.65	77.48
CDY24058	Canola	mitochondrion	75.76	76.58
VIT_09s0002g01800.t01	Wine grape	mitochondrion	66.49	67.21
VIT_11s0016g01870.t01	Wine grape	mitochondrion	64.88	66.54
KRH47526	Soybean	mitochondrion	63.99	65.63
KRH06095	Soybean	mitochondrion	63.99	65.63
PGSC0003DMT400048225	Potato	mitochondrion	64.53	65.58
Solyc07g006790.2.1	Tomato	plastid	64.35	65.28
HORVU6Hr1G003770.1	Barley	cytosol, mitochondrion	59.71	62.73
EES04754	Sorghum	mitochondrion	60.07	62.52
TraesCS6D01G024400.1	Wheat	golgi, mitochondrion	60.07	62.18
TraesCS6B01G028600.1	Wheat	mitochondrion	58.82	62.03
TraesCS6A01G022600.2	Wheat	golgi	59.36	61.9
Os06t0105400-02	Rice	mitochondrion	60.25	61.45
TraesCS7D01G011600.1	Wheat	golgi, mitochondrion	59.0	61.18
TraesCS4A01G481800.3	Wheat	mitochondrion, unclear	58.65	61.04
Os07t0410100-01	Rice	mitochondrion	58.47	60.63
TraesCS7A01G014600.4	Wheat	golgi, mitochondrion	58.29	60.44
Zm00001d053580_P002	Maize	mitochondrion	59.18	60.25
Os02t0105200-01	Rice	mitochondrion	58.82	60.22
HORVU7Hr1G001330.9	Barley	plastid	59.0	57.37
Zm00001d016365_P002	Maize	mitochondrion	60.78	55.27
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	61.14	54.02
CDX73652	Canola	mitochondrion	13.01	39.04
CDY23198	Canola	mitochondrion	11.94	37.02
CDY03145	Canola	plastid	27.09	33.33
CDY12039	Canola	plastid	26.56	33.11
CDY39183	Canola	plastid	27.27	32.42
CDY04184	Canola	plastid	27.63	32.36
CDX95323	Canola	mitochondrion	36.9	32.29
CDY13593	Canola	plastid	27.45	32.29
CDX83563	Canola	plastid	27.27	32.14
CDY23199	Canola	mitochondrion, plastid	37.25	30.33
CDY06613	Canola	mitochondrion	22.99	27.68
CDY17300	Canola	mitochondrion	22.82	27.47
CDY20790	Canola	mitochondrion	22.64	27.31
CDY19918	Canola	mitochondrion	22.46	27.16
CDX74077	Canola	mitochondrion, plastid	22.64	26.57
CDY08029	Canola	mitochondrion	22.64	26.19
CDY21016	Canola	mitochondrion, plastid	21.93	25.84
CDY31217	Canola	mitochondrion, plastid	22.1	25.78
CDY12012	Canola	plastid	22.82	24.52
CDY36727	Canola	plastid	22.82	23.93
CDY34925	Canola	mitochondrion	7.84	17.12
CDY69187	Canola	cytosol, nucleus	0.53	0.48
CDY17299	Canola	cytosol, plastid	0.53	0.45

Protein Annotations

KEGG:00010+2.3.1.12	KEGG:00020+2.3.1.12	KEGG:00620+2.3.1.12	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	GO:A0A078CFV0	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf
EnsemblPlants:CDX75740	ProteinID:CDX75740	ProteinID:CDX75740.1	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004742	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006090
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045254
EnsemblPlantsGene:GSBRNA2T00123662001	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	InterPro:LAT1
PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826
InterPro:PSBD	PANTHER:PTHR43178	PANTHER:PTHR43178:SF1	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777
InterPro:Single_hybrid_motif	TIGRFAMs:TIGR01349	UniParc:UPI0004EDF475	SEG:seg	:	:

Description

BnaC03g38230D

Coordinates

chrLK031805:+:289468..293688

Molecular Weight (calculated)

61056.8 Da

IEP (calculated)

8.423

GRAVY (calculated)

-0.365

Length

561 amino acids

Sequence
(BLAST)

001: MAYASRIIIH SNKLKHVSTL LRREHSVAAR GFSNSSTHPS LTARDYMLKT RPPVERISKC RATTVPMPSG ISTMSTKPMS GPSFFREYIS SSSQMRSVRG
101: FSSGSDLPPH QEIGMPSLSP TMTEAWTSHY FLTTTIYLSK LQGNIARWLK KEGDKVAPGE VLCEVETDKA TVEMECMEEG YLAKILKEEG AKAIQVGEVI
201: AITVEEEEDI QKFKDYTPSS GASPAAPEAK SAPSPPKEEK VEKPASAPEA KTSKPSSAPS EDRIFASPLA KKLAEDNNVP LSSIKATGPE GRIVKADVEE
301: FLASRGKETT AKPSKPTDSK VPALDYVDIP HTQIRKANTY TVTASRLAFS KQTIPHYYLT VDTCVDKMMG LRSQLNSFQE TNGGKRISVN DLVIKAAALA
401: LRKVPQCNSS WTDEYIRQFS NVNINVAVQT ENGLYVPVVK DADKKGLSTI GEEVRFLAQK AKENSLKPED YEGGTFTVSN LGGPFGIKQF CAVINPPQAA
501: ILAIGSAEKR VVAGGGPDQF NVASYMSVTL SCDHRVIDGA IGAEWLKAFK GYIETPESML L

Best Arabidopsis Sequence Match ( AT3G13930.1 )
(BLAST)

001: MASRIINHSK KLKHVSALLR RDHAVAVRCF SNSTHPSLVG REDIFKARLN YSSVERISKC GTGNVTMLSG ISTTSTKLSS PMAGPKLFKE FISSQMRSVR
101: GFSSSSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGFLAKIVK EEGAKEIQVG EVIAITVEDE DDIQKFKDYT
201: PSSDTGPAAP EAKPAPSLPK EEKVEKPASA PEAKISKPSS APSEDRIFAS PLARKLAEDN NVPLSSIKGT GPEGRIVKAD VEDFLASGSK ETTAKPSKQV
301: DSKVPALDYV DIPHTQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKMMGLR SQLNSFQEAS GGKRISVNDL VIKAAALALR KVPQCNSSWT DEYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DKKGLSTIGE EVRFLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VINPPQAAIL AIGSAEKRVV PGTGPDQYNV
501: ASYMSVTLSC DHRVIDGAIG AEWLKAFKGY IETPESMLL

Arabidopsis Description

Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.