CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23199	Canola	mitochondrion, plastid	98.28	91.44
CDY23198	Canola	mitochondrion	25.59	90.61
CDX73652	Canola	mitochondrion	24.65	84.49
AT3G52200.2	Thale cress	mitochondrion	87.52	78.68
KRG92074	Soybean	cytosol, mitochondrion	13.42	78.18
TraesCS7A01G305100.1	Wheat	mitochondrion	44.93	65.16
TraesCS7B01G205500.1	Wheat	mitochondrion	44.62	64.71
VIT_13s0074g00150.t01	Wine grape	mitochondrion	63.81	64.31
Os06t0499900-01	Rice	mitochondrion	46.02	60.95
GSMUA_AchrUn_...	Banana	mitochondrion	46.33	60.0
KXG37311	Sorghum	mitochondrion	45.24	59.92
Solyc11g007720.1.1	Tomato	nucleus, unclear	59.59	59.32
Zm00001d034531_P001	Maize	mitochondrion	45.55	59.23
KRG92075	Soybean	mitochondrion	47.11	58.3
TraesCS7D01G301900.1	Wheat	golgi	46.49	56.87
KRH34708	Soybean	mitochondrion	59.59	56.51
HORVU7Hr1G072650.1	Barley	mitochondrion	46.18	56.49
CDY33075	Canola	mitochondrion, plastid	32.61	37.66
CDY24058	Canola	mitochondrion	32.14	37.12
CDY55206	Canola	mitochondrion	29.64	37.11
CDX82504	Canola	plastid	31.05	36.99
CDX75740	Canola	mitochondrion, plastid	32.29	36.9
CDX97529	Canola	mitochondrion	32.14	36.65
CDX83563	Canola	plastid	21.68	29.2
CDY13593	Canola	plastid	21.53	28.93
CDY39183	Canola	plastid	21.22	28.81
CDY03145	Canola	plastid	20.44	28.73
CDY12039	Canola	plastid	20.12	28.67
CDY04184	Canola	plastid	21.22	28.39
CDY20790	Canola	mitochondrion	19.66	27.1
CDY06613	Canola	mitochondrion	19.66	27.04
CDY17300	Canola	mitochondrion	19.66	27.04
CDY21016	Canola	mitochondrion, plastid	19.97	26.89
CDY31217	Canola	mitochondrion, plastid	20.12	26.82
CDY19918	Canola	mitochondrion	19.19	26.51
CDY12012	Canola	plastid	19.5	23.95
CDX74077	Canola	mitochondrion, plastid	17.63	23.64
CDY36727	Canola	plastid	19.5	23.36
CDY08029	Canola	mitochondrion	17.47	23.09
CDY34925	Canola	mitochondrion	6.24	15.56
CDY69187	Canola	cytosol, nucleus	0.62	0.63
CDY17299	Canola	cytosol, plastid	0.62	0.6

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10
GO:A0A078E7H0	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EnsemblPlants:CDX95323	ProteinID:CDX95323	ProteinID:CDX95323.1
InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740
GO:GO:0016746	EnsemblPlantsGene:GSBRNA2T00100990001	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625
PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826
InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF9	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777
InterPro:Single_hybrid_motif	UniParc:UPI0004EC17DE	SEG:seg	:	:	:

Description

BnaC04g28350D

Coordinates

chrLK031888:+:216383..222722

Molecular Weight (calculated)

68969.2 Da

IEP (calculated)

5.598

GRAVY (calculated)

-0.242

Length

641 amino acids

Sequence
(BLAST)

001: MVLPLLRRAA IARTSSLLRA RLLAPASGFH TRFSNGLCHS DDKISSSHGA SFRSASIDMI TRMDNSHPTS ILRFGMRNFS SSGTTPQTVL TMPALSPTMS
101: HGNIAKWLKK EGDKVEVGDV LCEIETDKAT VELESQEEGF LAKIVVTEGS KDIPVNAPIA IMVEEEDDIQ NVSAVEGGQV GKEETSAHQE KKSEESTQQR
201: DSIQPDASDL PPHVVLEMPA LSPTMNQGNI AKWWKKEGDK IEVGDVIGEI ETDKATLEFE SLEEGYLAKI LIPEGSKDVA VGKPIALIVE DAESIEAIKS
301: SSAGGSEAVT EKQAPQSVVD KSGGKKAGFT KISPAAKLLI LEHGLEASSI EASGPYGTLL KSDVVAAIAS GKTSKKSVST EKKQPSKENI SKSSSVSRPE
401: SKSSVTPSND YEDFPNSQIR KIIAKRLLES KQKIPHLYLS SDVVLDPLLA FRKELQENHG VKVSVNDIVI KAVAVALRNV RQANAFWDAE KGEIVLCEDV
501: DISIAVATEK GLMTPIIRNA DQKSISAISS EVKELAQKAR SGKLAPHEFQ GGTFSISNLG MYPVDQFCAI INPPQAGILA VGRGNKVVEA ILGIDGTEKP
601: SVVTKMNVTL SADHRIFDGQ VGASFLSELR SNFEDVRRLL L

Best Arabidopsis Sequence Match ( AT3G52200.1 )
(BLAST)

001: MVLPLFRRAA IARTSSLLRA RLFAPASEFH SRFSNGLYHL DDKISSSNGV RSASIDLITR MDDSSPKPIL RFGVQNFSST GPISQTVLAM PALSPTMSHG
101: NVVKWMKKEG DKVEVGDVLC EIETDKATVE FESQEEGFLA KILVTEGSKD IPVNEPIAIM VEEEDDIKNV PATIEGGRDG KEETSAHQVM KPDESTQQKS
201: SIQPDASDLP PHVVLEMPAL SPTMNQGNIA KWWKKEGDKI EVGDVIGEIE TDKATLEFES LEEGYLAKIL IPEGSKDVAV GKPIALIVED AESIEAIKSS
301: SAGSSEVDTV KEVPDSVVDK PTERKAGFTK ISPAAKLLIL EHGLEASSIE ASGPYGTLLK SDVVAAIASG KASKSSASTK KKQPSKETPS KSSSTSKPSV
401: TQSDNNYEDF PNSQIRKIIA KRLLESKQKI PHLYLQSDVV LDPLLAFRKE LQENHGVKVS VNDIVIKAVA VALRNVRQAN AFWDAEKGDI VMCDSVDISI
501: AVATEKGLMT PIIKNADQKS ISAISLEVKE LAQKARSGKL APHEFQGGTF SISNLGMYPV DNFCAIINPP QAGILAVGRG NKVVEPVIGL DGIEKPSVVT
601: KMNVTLSADH RIFDGQVGAS FMSELRSNFE DVRRLLL

Arabidopsis Description

LTA3Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:F4J5T2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.