CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75740	mitochondrion
CDX82504	mitochondrion
CDX97529	mitochondrion
CDY24058	mitochondrion
CDY33075	mitochondrion
CDY55206	mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54220.1	CDY24058	AT1G54220.1	24846799
AT1G54220.1	CDY33075	AT1G54220.1	24846799
AT1G54220.1	CDX75740	AT3G13930.1	24846799
AT1G54220.1	CDX82504	AT3G13930.1	24846799
AT1G54220.1	CDX97529	AT3G13930.1	24846799
AT1G54220.1	CDY55206	AT3G13930.1	24846799

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24058	Canola	mitochondrion	94.59	94.59
AT1G54220.1	Thale cress	mitochondrion	85.77	88.31
CDX82504	Canola	plastid	75.68	78.07
CDY55206	Canola	mitochondrion	71.89	77.93
CDX97529	Canola	mitochondrion	78.38	77.4
CDX75740	Canola	mitochondrion, plastid	77.48	76.65
KRH06095	Soybean	mitochondrion	67.03	68.01
KRH47526	Soybean	mitochondrion	66.49	67.46
VIT_11s0016g01870.t01	Wine grape	mitochondrion	65.77	66.73
VIT_09s0002g01800.t01	Wine grape	mitochondrion	66.49	66.49
Solyc07g006790.2.1	Tomato	plastid	65.59	65.82
PGSC0003DMT400048225	Potato	mitochondrion	64.86	65.22
EES04754	Sorghum	mitochondrion	61.08	62.89
TraesCS7D01G011600.1	Wheat	golgi, mitochondrion	60.54	62.11
TraesCS6D01G024400.1	Wheat	golgi, mitochondrion	60.54	61.99
HORVU6Hr1G003770.1	Barley	cytosol, mitochondrion	59.64	61.98
TraesCS7A01G014600.4	Wheat	golgi, mitochondrion	60.36	61.92
TraesCS6B01G028600.1	Wheat	mitochondrion	59.28	61.84
TraesCS4A01G481800.3	Wheat	mitochondrion, unclear	59.64	61.41
TraesCS6A01G022600.2	Wheat	golgi	59.46	61.34
Zm00001d053580_P002	Maize	mitochondrion	60.54	60.98
Os06t0105400-02	Rice	mitochondrion	60.36	60.91
Os07t0410100-01	Rice	mitochondrion	58.74	60.26
Os02t0105200-01	Rice	mitochondrion	59.28	60.04
HORVU7Hr1G001330.9	Barley	plastid	59.82	57.54
Zm00001d016365_P002	Maize	mitochondrion	61.44	55.27
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	60.36	52.76
CDY23198	Canola	mitochondrion	13.51	41.44
CDX73652	Canola	mitochondrion	13.15	39.04
CDY13593	Canola	plastid	28.11	32.7
CDY03145	Canola	plastid	26.85	32.68
CDY12039	Canola	plastid	26.49	32.67
CDX95323	Canola	mitochondrion	37.66	32.61
CDX83563	Canola	plastid	27.93	32.56
CDY39183	Canola	plastid	27.57	32.42
CDY04184	Canola	plastid	27.93	32.36
CDY23199	Canola	mitochondrion, plastid	38.02	30.62
CDY06613	Canola	mitochondrion	22.52	26.82
CDY17300	Canola	mitochondrion	22.34	26.61
CDX74077	Canola	mitochondrion, plastid	22.88	26.57
CDY20790	Canola	mitochondrion	22.16	26.45
CDY19918	Canola	mitochondrion	21.98	26.29
CDY08029	Canola	mitochondrion	22.88	26.19
CDY21016	Canola	mitochondrion, plastid	21.8	25.42
CDY31217	Canola	mitochondrion, plastid	21.8	25.16
CDY12012	Canola	plastid	22.52	23.95
CDY36727	Canola	plastid	22.34	23.18
CDY34925	Canola	mitochondrion	7.93	17.12
CDY69187	Canola	cytosol, nucleus	0.54	0.48
CDY17299	Canola	cytosol, plastid	0.54	0.45

Protein Annotations

KEGG:00010+2.3.1.12	KEGG:00020+2.3.1.12	KEGG:00620+2.3.1.12	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	GO:A0A078H395	UniProt:A0A078H395	InterPro:Biotin_lipoyl
InterPro:CAT-like_dom_sf	EnsemblPlants:CDY33075	ProteinID:CDY33075	ProteinID:CDY33075.1	InterPro:E3-bd_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004742	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0006090	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016746	GO:GO:0045254	EnsemblPlantsGene:GSBRNA2T00053717001	InterPro:IPR000089	InterPro:IPR004167
InterPro:IPR023213	InterPro:IPR036625	InterPro:LAT1	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817
ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR43178	PANTHER:PTHR43178:SF1
SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	TIGRFAMs:TIGR01349	UniParc:UPI0004EE9F0D
SEG:seg	:	:	:	:	:

Description

BnaC06g07040DAcetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A078H395]

Coordinates

chrLK032305:+:298421..302395

Molecular Weight (calculated)

60185.7 Da

IEP (calculated)

6.987

GRAVY (calculated)

-0.349

Length

555 amino acids

Sequence
(BLAST)

001: MAYASRILLN HSKKLKDVST LLRREQAASV RYFSSTKRAS LSREDASSAR LGFSPVERIT RCSTDIVPVS ISFATTRTTL SSTVGRPRLG QEFSCSMQSV
101: RGFSSGSDLP PHQEIGMPSL SPTMTEAWTS ILPLDQNLCP FGNIAKWLKK EGDKVAPGEV LCEVETDKAT VEMECMEEGF LAKIVKAEGS KEIQVGEVIA
201: ITVEDEEDIG KFKDYTPSST ADATPPKEEL APPPPKEEKV EQASPPPEPK TSKPSPPPSG DRVFASPLAR KLAEDNNVPL SSIKGTGPEG RIVKADIEDY
301: LASGGKEATA KQSKVTHSKV PALDYVDIPR SQIRKVTASR LAFSKQTIPH YYLTVDACVD KLMGLRSQLN SFQEASGGKR ISVNDLVVKA AALALRKVPQ
401: CNSSWTDDYI RQFKNVNINV AVQTENGLYV PVVKDADKKG LSTIGEEVRL LAQKAKENSL KPEDYEGGTF TVSNLGGPFG IKQFCAVVNP PQAAILAVGS
501: AEKRVVPGNG PDEFNFASYM PVTLSCDHRV VDGAIGAEWL KAFKGYIENP ESMLL

Best Arabidopsis Sequence Match ( AT1G54220.2 )
(BLAST)

001: MAYASRIINH SKKLKDVSTL LRRENAATIR YYSNTNRAPL NREDTFNSRL GYPPLERISI CSTSTLPVSI IFSTTRSNLS SAMGRPIFGK EFSCLMQSAR
101: GFSSGSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGYLAKIVK AEGSKEIQVG EVIAITVEDE EDIGKFKDYT
201: PSSTADAAPT KAEPTPAPPK EEKVKQPSSP PEPKASKPST PPTGDRVFAS PLARKLAEDN NVPLSDIEGT GPEGRIVKAD IDEYLASSGK GATAKPSKST
301: DSKAPALDYV DIPHSQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKLMALR SQLNSFKEAS GGKRISVNDL VVKAAALALR KVPQCNSSWT DDYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DRKGLSTIGE EVRLLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VVNPPQAAIL AVGSAEKRVV PGNGPDQFNF
501: ASYMPVTLSC DHRVVDGAIG AEWLKAFKGY IENPKSMLL

Arabidopsis Description

Acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.