CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74077	Canola	mitochondrion, plastid	94.85	96.23
Bra001220.1-P	Field mustard	mitochondrion	94.02	92.31
AT3G06850.1	Thale cress	mitochondrion, plastid	81.44	81.78
CDY34925	Canola	mitochondrion	35.46	66.93
VIT_05s0077g02080.t01	Wine grape	cytosol	56.7	59.4
Solyc01g066520.2.1	Tomato	plastid	56.7	54.46
PGSC0003DMT400029466	Potato	mitochondrion	56.08	53.86
KRH02272	Soybean	mitochondrion	56.29	53.01
HORVU2Hr1G012440.1	Barley	cytosol	47.84	52.61
EES02874	Sorghum	mitochondrion	56.49	52.39
KRH50815	Soybean	mitochondrion	55.46	52.23
Zm00001d040670_P004	Maize	mitochondrion	55.46	51.43
TraesCS2D01G073400.1	Wheat	mitochondrion	53.61	51.18
TraesCS2A01G074700.1	Wheat	nucleus	53.4	50.68
GSMUA_Achr10P...	Banana	mitochondrion	54.64	49.91
CDX73652	Canola	mitochondrion	10.31	26.74
CDY12039	Canola	plastid	22.68	24.44
CDY03145	Canola	plastid	22.68	24.12
CDY13593	Canola	plastid	23.71	24.11
CDX83563	Canola	plastid	23.51	23.95
CDY39183	Canola	plastid	23.09	23.73
CDX82504	Canola	plastid	26.19	23.61
CDY04184	Canola	plastid	23.3	23.59
CDY55206	Canola	mitochondrion	24.74	23.44
CDY33075	Canola	mitochondrion, plastid	26.19	22.88
CDX97529	Canola	mitochondrion	26.39	22.78
CDX75740	Canola	mitochondrion, plastid	26.19	22.64
CDY24058	Canola	mitochondrion	25.77	22.52
CDY21016	Canola	mitochondrion, plastid	20.62	21.01
CDY31217	Canola	mitochondrion, plastid	20.82	21.0
CDY23198	Canola	mitochondrion	7.63	20.44
CDY20790	Canola	mitochondrion	19.18	20.0
CDY06613	Canola	mitochondrion	19.18	19.96
CDY17300	Canola	mitochondrion	19.18	19.96
CDY19918	Canola	mitochondrion	18.97	19.83
CDY12012	Canola	plastid	19.18	17.82
CDY36727	Canola	plastid	19.59	17.76
CDX95323	Canola	mitochondrion	23.09	17.47
CDY23199	Canola	mitochondrion, plastid	23.71	16.69
CDY69187	Canola	cytosol, nucleus	0.21	0.16
CDY17299	Canola	cytosol, plastid	0.21	0.15

Protein Annotations

KEGG:00062+2.3.1.16	KEGG:00071+2.3.1.16	KEGG:00280+2.3.1.168	KEGG:00280+2.3.1.168+2.3.1.16	KEGG:00281+2.3.1.16	KEGG:00362+2.3.1.16
KEGG:00592+2.3.1.16	KEGG:00640+2.3.1.168	KEGG:00642+2.3.1.16	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100
Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:4.2.7.2.2	GO:A0A078F4U7	UniProt:A0A078F4U7	InterPro:BCKADH_E2
InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EnsemblPlants:CDY08029	ProteinID:CDY08029	ProteinID:CDY08029.1	InterPro:E3-bd_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746
EnsemblPlantsGene:GSBRNA2T00125277001	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	PFAM:PF00198
PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD
PANTHER:PTHR43178	PANTHER:PTHR43178:SF5	MetaCyc:PWY-5046	MetaCyc:PWY-5136	MetaCyc:PWY-6435	MetaCyc:PWY-6863
MetaCyc:PWY-6945	MetaCyc:PWY-6946	MetaCyc:PWY-6948	MetaCyc:PWY-7094	MetaCyc:PWY-7288	MetaCyc:PWY-7337
MetaCyc:PWY-7338	MetaCyc:PWY-7339	MetaCyc:PWY-7340	MetaCyc:PWY-735	MetaCyc:PWY-7606	MetaCyc:PWY-7654
MetaCyc:PWY-7726	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI0004EEE503

Description

BnaC03g34940DDihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A078F4U7]

Coordinates

chrLK031982:+:708485..710968

Molecular Weight (calculated)

53224.3 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.100

Length

485 amino acids

Sequence
(BLAST)

001: MIARRIWRSH RFLRPFSSSS VCAPPLLAPY HSQWFASPKS RPFLVPSLSL MKWCEGGGGG SRSWFSNEAM SIDSDARGGF IDVPLAQTGE GIAECELLKW
101: FVKEGDPVEE FQPLCEVQSD KATIEITSRF KGKVALISHA PGDIIKVGET LVKLAVEDAN DALQVSSDTP ENVEPICSKP KLDSLVGALS TPAVRTLAKD
201: LGIDINLVIG SGKDGRVLKE DVLQFSGQKQ NVTDSAPSDN PFIRGDSVST NYEDQIVPLR GFNRAMVKTM TMATKVPHFH FVEEINCDAL VKLKHFFKDH
301: NTDSTVKHTF LPTLIKSLSM ALTKYPYVNG CFNEESLEII LKGSHNIGVA MATEHGLVVP NIKNVQSLSL LEITREMSRL QHLATNNKLS PEDVTGGTIT
401: LSNIGAIGGK FGSPLLNLPE VAIIALGRIE KVPKFKEDGS VYPASTMMVN IAADHRVLDG ATVARFCCQW KEYIEKPELL MLQMR

Best Arabidopsis Sequence Match ( AT3G06850.2 )
(BLAST)

001: MIARRIWRSH RFLRPFSSSS VCSPPFRVPE YLSQSSSSPA SRPFFVHPPT LMKWGGGSRS WFSNEAMATD SNSGLIDVPL AQTGEGIAEC ELLKWFVKEG
101: DSVEEFQPLC EVQSDKATIE ITSRFKGKVA LISHSPGDII KVGETLVRLA VEDSQDSLLT TDSSEIVTLG GSKQGTENLL GALSTPAVRN LAKDLGIDIN
201: VITGTGKDGR VLKEDVLRFS DQKGFVTDSV SSEHAVIGGD SVSTKASSNF EDKTVPLRGF SRAMVKTMTM ATSVPHFHFV EEINCDSLVE LKQFFKENNT
301: DSTIKHTFLP TLIKSLSMAL TKYPFVNSCF NAESLEIILK GSHNIGVAMA TEHGLVVPNI KNVQSLSLLE ITKELSRLQH LAANNKLNPE DVTGGTITLS
401: NIGAIGGKFG SPLLNLPEVA IIALGRIEKV PKFSKEGTVY PASIMMVNIA ADHRVLDGAT VARFCCQWKE YVEKPELLML QMR

Arabidopsis Description

BCE2Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M7Z1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.