CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17299	Canola	cytosol, plastid	98.57	93.38
CDY36727	Canola	plastid	4.6	5.42
CDY12012	Canola	plastid	3.49	4.21
CDY06613	Canola	mitochondrion	2.54	3.43
CDY20790	Canola	mitochondrion	2.38	3.23
CDY17300	Canola	mitochondrion	2.38	3.22
Zm00001d041839_P001	Maize	plastid	3.02	3.2
CDY19918	Canola	mitochondrion	2.22	3.02
CDY23198	Canola	mitochondrion	0.63	2.21
CDY21016	Canola	mitochondrion, plastid	1.27	1.68
CDX73652	Canola	mitochondrion	0.48	1.6
CDY31217	Canola	mitochondrion, plastid	0.95	1.25
CDY55206	Canola	mitochondrion	0.63	0.78
CDX97529	Canola	mitochondrion	0.63	0.71
CDX95323	Canola	mitochondrion	0.63	0.62
CDY23199	Canola	mitochondrion, plastid	0.63	0.58
CDX82504	Canola	plastid	0.48	0.56
CDY24058	Canola	mitochondrion	0.48	0.54
CDY33075	Canola	mitochondrion, plastid	0.48	0.54
CDX75740	Canola	mitochondrion, plastid	0.48	0.53
HORVU5Hr1G038090.3	Barley	plastid	0.32	0.46
CDY34925	Canola	mitochondrion	0.16	0.39
CDY03145	Canola	plastid	0.16	0.22
CDX74077	Canola	mitochondrion, plastid	0.16	0.21
CDY08029	Canola	mitochondrion	0.16	0.21
CDX83563	Canola	plastid	0.0	0.0
CDY13593	Canola	plastid	0.0	0.0
CDY39183	Canola	plastid	0.0	0.0
CDY12039	Canola	plastid	0.0	0.0
OQU78843	Sorghum	plastid	0.0	0.0
Os12t0182200-01	Rice	plastid	0.0	0.0
PGSC0003DMT400023831	Potato	plastid	0.0	0.0
Solyc11g017250.1.1	Tomato	plastid	0.0	0.0
TraesCS5A01G119600.1	Wheat	plastid	0.0	0.0
TraesCS5B01G116300.1	Wheat	golgi, unclear	0.0	0.0
TraesCS5D01G125900.1	Wheat	plastid	0.0	0.0
TraesCS5D01G126000.1	Wheat	cytosol	0.0	0.0
Zm00001d023606_P005	Maize	plastid	0.0	0.0
CDY04184	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY69187	EnsemblPlantsGene:GSBRNA2T00083878001	GO:A0A078JUL2	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150
GO:GO:0030234	GO:GO:0043547	InterPro:Rab3-GAP_cat_su	PANTHER:PTHR21422	PANTHER:PTHR21422:SF9	PFAM:PF13890
ProteinID:CDY69187	ProteinID:CDY69187.1	SEG:seg	UniParc:UPI0004EDB0D5	UniProt:A0A078JUL2	MapMan:35.2

Description

BnaCnng62280DBnaCnng62280D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUL2]

Coordinates

chrLK038821:+:336..4216

Molecular Weight (calculated)

70256.6 Da

IEP (calculated)

5.042

GRAVY (calculated)

-0.427

Length

630 amino acids

Sequence
(BLAST)

001: EEQPSTRNEN DSKEENEVKP QGWRTAHIRK KQEWQNKLKY LRIGRKEVVE DKDKAEDSTM LAPFYDQNSL ILKAQEQEAK ASDVGNLIQV LNAVDVNSIP
101: RASVVKQLAI AIEAGKMAKT MKEFAASSGS SSPGRDRGGL SLSAVKSMVL GEKEDKIGFD SRDEEKLVSL INAMFNVDGN FLVRMIVSDL ESPTNRASFA
201: KDLHVAPPSS FVVKLAEVIG SFTTPSRMAL FWCRVVDELR RFWNEKKHIP WIPLDENPDL KSCLLHQWLQ VINCCLGRKA RCIAASEALD AVMRQASPAN
301: EKSDISEAMG SPVSLLYAKS NTGELILRLG IHHQVENLTM LETGEPVYAP ITQEGPLLTE DLIKETEELV LRTGSMGAGC SQLLSDMQAF KAANPGCILE
401: DFVRWHSPPD WTGNDTSSGD DSSPLRGQLS IRMQKEGNLW RELWETAKPL PAVKQTPLYD EDFAVEGILN SLEDIPPVDF FGQLFVSLVA LGFVMAEPVV
501: ATNDDLSKLF FECKDYVVAT CQGDAWTDKL DDLCQVYETV ETMLVRPEKV LRSMKQTEES PSGGNETKRR FRRLSFIFRG KEGNKNRVPS ETEQKSTEPS
601: PRQSFSSLFD GKSSLFAKKP PRPAENGTLV

Best Arabidopsis Sequence Match ( AT5G55060.1 )
(BLAST)

001: METAPPSLVS KARTAFNSAA AKAERVFTDL KSDREEEKQS TRNVNDSQEE NEVKTQGWRT AHIRKKQEWQ NKLKNLRIGR KEVEDQDKVE DSAMAAPFYD
101: ENFYILKAKQ EQEAKASDVG CMVESLNAVD ANSIPLASVV KQLAVAIEAG KRAKNVKDFV ASSGSSSPVR ERGGLSLSAV KSLVLGEKED KLGFDSGDED
201: KLVSLINALF NVDSGFLSRK IVSDLESPTN RSSFAKDLHA APPSSFVVKL AEVIGSFTTP RRMALFWCRV VEELRRFWNE EKHIPWIPLD NNPDLKSCLL
301: HQWLQVINCC LARKARNVAA SEALDAVMRQ ASSANEKSDV SESMGSLLYA KSNSGELILR LGVYNQVENL TMLETGEPVY SPITQEGPLL TEDLIRETEE
401: LVLRTGSMGA GCSQLLSDMQ AFKAANPGCI LEDFVRWHSP PDWTENGNMS GDDSSPVRGQ LSTRMQKEGN LWRELWETAK PLPAVKQAPL FDEDLAVEGI
501: LNYLEDIPAA ELFEQLFTSL VSLGFVMVEP VLATNDDLSK LFFECKDYVV AICQGGAWTD KLDDLCQVYE TVETMLLRPE EVLRSMKQTE ESPSSGSETK
601: RRFKRLGFIF RGSKERKQTR VPSETEQKST EPSPRQSFSS LFDGKSSLFS KRPPRPENVT LV

Arabidopsis Description

Rab3 GTPase-activating protein catalytic subunit [Source:UniProtKB/TrEMBL;Acc:Q683D2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.