CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17300	Canola	mitochondrion	96.34	95.92
CDY20790	Canola	mitochondrion	93.97	93.76
CDY06613	Canola	mitochondrion	93.75	93.35
AT5G55070.1	Thale cress	mitochondrion	91.38	91.38
CDY12012	Canola	plastid	91.59	81.42
CDY36727	Canola	plastid	92.67	80.37
Solyc12g005080.1.1	Tomato	nucleus	62.93	78.92
VIT_19s0090g00750.t01	Wine grape	cytosol	60.99	72.19
Solyc07g064800.2.1	Tomato	extracellular, nucleus	72.63	72.01
PGSC0003DMT400071652	Potato	mitochondrion	72.41	71.34
PGSC0003DMT400057449	Potato	mitochondrion	71.77	71.15
VIT_10s0116g01480.t01	Wine grape	mitochondrion	71.55	70.19
GSMUA_Achr3P18670_001	Banana	mitochondrion	67.46	69.25
Os04t0394200-01	Rice	mitochondrion	65.52	69.09
TraesCS4D01G070200.1	Wheat	mitochondrion	65.09	68.95
Os02t0514700-00	Rice	mitochondrion	59.05	68.84
KRH14369	Soybean	nucleus	68.75	68.75
TraesCS4B01G071300.1	Wheat	mitochondrion	64.87	68.72
KRH73773	Soybean	mitochondrion	68.53	68.53
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	64.66	68.49
GSMUA_AchrUn_...	Banana	mitochondrion	66.38	68.14
TraesCS2D01G039500.2	Wheat	mitochondrion	65.3	68.09
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	65.09	67.87
TraesCS2B01G053600.1	Wheat	mitochondrion	62.28	67.68
Zm00001d025258_P009	Maize	mitochondrion	64.44	67.04
CDY31217	Canola	mitochondrion, plastid	69.18	66.74
CDY21016	Canola	mitochondrion, plastid	68.1	66.39
OQU93042	Sorghum	mitochondrion	65.3	64.88
GSMUA_Achr9P01190_001	Banana	cytosol	68.1	63.58
Zm00001d003923_P002	Maize	mitochondrion	64.66	63.42
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	64.44	62.82
CDX73652	Canola	mitochondrion	12.07	29.95
CDX82504	Canola	plastid	26.29	22.68
CDY55206	Canola	mitochondrion	25.0	22.66
CDX75740	Canola	mitochondrion, plastid	27.16	22.46
CDX97529	Canola	mitochondrion	26.72	22.06
CDY33075	Canola	mitochondrion, plastid	26.29	21.98
CDY24058	Canola	mitochondrion	26.08	21.8
CDY23198	Canola	mitochondrion	7.97	20.44
CDY03145	Canola	plastid	19.61	19.96
CDX83563	Canola	plastid	20.26	19.75
CDY13593	Canola	plastid	20.26	19.71
CDY12039	Canola	plastid	18.75	19.33
CDY39183	Canola	plastid	19.61	19.28
CDY04184	Canola	plastid	19.83	19.21
CDX95323	Canola	mitochondrion	26.51	19.19
CDX74077	Canola	mitochondrion, plastid	19.61	19.04
CDY08029	Canola	mitochondrion	19.83	18.97
Os01t0314100-01	Rice	mitochondrion	20.47	18.16
CDY23199	Canola	mitochondrion, plastid	26.29	17.71
CDY34925	Canola	mitochondrion	6.47	11.67
CDY69187	Canola	cytosol, nucleus	3.02	2.22
CDY17299	Canola	cytosol, plastid	3.02	2.11
Os01t0314000-01	Rice	cytosol	0.86	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	GO:A0A078G5D3	UniProt:A0A078G5D3	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EnsemblPlants:CDY19918
ProteinID:CDY19918	ProteinID:CDY19918.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252	EnsemblPlantsGene:GSBRNA2T00009710001
InterPro:IPR000089	InterPro:IPR023213	PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968
PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	MetaCyc:PWY-5084	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif
InterPro:SucB	TIGRFAMs:TIGR01347	UniPathway:UPA00868	UniParc:UPI0004EF4660	SEG:seg	:

Description

BnaC09g31840DBnaC09g31840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5D3]

Coordinates

chrLK032101:-:567126..570655

Molecular Weight (calculated)

50194.3 Da

IEP (calculated)

9.546

GRAVY (calculated)

-0.228

Length

464 amino acids

Sequence
(BLAST)

001: MMLRAVIRRA SSRGSSASSG LAKSMKSSRV AASSQSFHSL SATETLVPRG SHARSYFHHR SCPGCSECSR TLLTSFQGTT LQKWVRPFSS DSGDVVEAVV
101: PHMGESITDG TLANFLKQPG DRVEADEAIA QIETDKVTID IASPASGVIQ EFLVKEGDTV EPGNKVAIIS KSADAVSHVA PSEKIPEKAA PKPSPAEEPK
201: VESTKVAEKP KASSPPPPPT KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEIDMT NLMKLRSQYK DAFFEKHGVK LGLMSGFIKA
301: AVSALQAQPV VNAVIDGDDI IYRDYIDISI AVGTSKGLVV PVIRGADQMN FADIEKTINS LAKKANEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI

Best Arabidopsis Sequence Match ( AT5G55070.1 )
(BLAST)

001: MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC PGCPDCSRTI INGYQGTALQ RWVRPFSSDS GDVVEAVVPH
101: MGESITDGTL AAFLKKPGDR VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS EKAPEKPAPK PSPPAEKPKV
201: ESTKVAEKPK APSPPPPPPS KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFLEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRDADKMN FADIEKTING LAKKATEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.