Factsheet for VIT_10s0116g01480.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g01280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005080.1.1	Tomato	nucleus	64.9	82.97
VIT_19s0090g00750.t01	Wine grape	cytosol	65.75	79.34
GSMUA_AchrUn_...	Banana	mitochondrion	71.46	74.78
GSMUA_Achr3P18670_001	Banana	mitochondrion	70.82	74.11
PGSC0003DMT400071652	Potato	mitochondrion	73.36	73.67
Bra035551.1-P	Field mustard	mitochondrion	67.44	73.33
Solyc07g064800.2.1	Tomato	extracellular, nucleus	72.52	73.29
PGSC0003DMT400057449	Potato	mitochondrion	71.88	72.65
CDY17300	Canola	mitochondrion	71.25	72.32
Bra002934.1-P	Field mustard	mitochondrion	71.25	72.32
KRH14369	Soybean	nucleus	70.82	72.2
KRH73773	Soybean	mitochondrion	70.82	72.2
CDY19918	Canola	mitochondrion	70.19	71.55
AT5G55070.1	Thale cress	mitochondrion	69.98	71.34
CDY20790	Canola	mitochondrion	69.98	71.18
CDY06613	Canola	mitochondrion	69.98	71.03
Os02t0514700-00	Rice	mitochondrion	59.62	70.85
Os04t0394200-01	Rice	mitochondrion	65.54	70.45
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	65.12	70.32
TraesCS4B01G071300.1	Wheat	mitochondrion	64.9	70.09
TraesCS4D01G070200.1	Wheat	mitochondrion	64.9	70.09
Zm00001d025258_P009	Maize	mitochondrion	65.12	69.06
CDY31217	Canola	mitochondrion, plastid	70.19	69.02
TraesCS2D01G039500.2	Wheat	mitochondrion	64.69	68.76
AT4G26910.1	Thale cress	mitochondrion	67.44	68.75
Bra016809.1-P	Field mustard	mitochondrion, plastid	68.92	68.63
GSMUA_Achr9P01190_001	Banana	cytosol	72.09	68.61
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	64.48	68.54
CDY21016	Canola	mitochondrion, plastid	68.92	68.49
TraesCS2B01G053600.1	Wheat	mitochondrion	61.31	67.92
OQU93042	Sorghum	mitochondrion	65.33	66.17
Bra028992.1-P	Field mustard	mitochondrion	68.92	65.99
Zm00001d003923_P002	Maize	mitochondrion	65.12	65.12
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	65.12	64.71
CDY12012	Canola	plastid	70.4	63.79
CDY36727	Canola	plastid	69.13	61.12
VIT_11s0016g01870.t01	Wine grape	mitochondrion	26.64	23.03
VIT_09s0002g01800.t01	Wine grape	mitochondrion	26.43	22.52
VIT_13s0074g00150.t01	Wine grape	mitochondrion	27.06	20.13
VIT_01s0011g03380.t01	Wine grape	plastid	19.45	18.85
VIT_05s0077g02080.t01	Wine grape	cytosol	18.39	18.79
VIT_18s0072g01000.t01	Wine grape	plastid	18.39	18.24
Os01t0314100-01	Rice	mitochondrion	19.03	17.21
Os01t0314000-01	Rice	cytosol	0.85	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	EntrezGene:100244395	wikigene:100244395	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase
MapMan:2.3.4.2	Gene3D:2.40.50.100	Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	ProteinID:CCB48200
ProteinID:CCB48200.1	UniProt:F6H7I5	EMBL:FN595248	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252
InterPro:IPR000089	InterPro:IPR023213	EntrezGene:LOC100244395	wikigene:LOC100244395	PFAM:PF00198	PFAM:PF00364
ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	SUPFAM:SSF51230	SUPFAM:SSF52777
InterPro:Single_hybrid_motif	InterPro:SucB	TIGR:TC53882	TIGR:TC63039	TIGRFAMs:TIGR01347	UniParc:UPI0002108A10
ArrayExpress:VIT_10s0116g01480	EnsemblPlantsGene:VIT_10s0116g01480	EnsemblPlants:VIT_10s0116g01480.t01	unigene:Vvi.24530	unigene:Vvi.7649	RefSeq:XP_002266593
RefSeq:XP_002266593.2	RefSeq:XP_010655378.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:750430..773019

Molecular Weight (calculated)

51078.9 Da

IEP (calculated)

9.935

GRAVY (calculated)

-0.209

Length

473 amino acids

Sequence
(BLAST)

001: MWAIVRRKVA SGSSAASVLG QSLSKIRPAA ASVPRGYTTT AKEALLLGGG SKIIRNVGHY KYLGSLVSSK PVREVTSFLQ IDSPIQVQHR PFSSDKGDLV
101: DAVVPFMGES ISDGTLAKFL KKPGDHVEVD EPIAQIETDK VTIDVASPEA GVVQKFVAKE GDVVEPGTKI AVISKSGEGV THVAPSEKTP SKASPEPSPT
201: EKEAVDKPKP KSETPPPKEK PKAPAPPPPR PSATEPVLPP KERERRVPMT RLRKRVATRL KDSQNTFAML TTFNEVDMTN LMKLRSDYKD AFLEKHGVKL
301: GLMSGFIKAA VSGLQNQPII NAVIDGDDII YRDYIDISIA VGTPKGLVVP VIRNADGMNF ADIEKAINTL ARKANDGTIS IDEMAGGSFT ISNGGVYGSL
401: LSTPIINPPQ SAILGMHSIV NRPMVVGGNV VSRPMMYIAL TYDHRLIDGR EAVFFLRRIK DVVEDPRRLL LDI

Best Arabidopsis Sequence Match ( AT5G55070.1 )
(BLAST)

001: MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC PGCPDCSRTI INGYQGTALQ RWVRPFSSDS GDVVEAVVPH
101: MGESITDGTL AAFLKKPGDR VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS EKAPEKPAPK PSPPAEKPKV
201: ESTKVAEKPK APSPPPPPPS KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFLEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRDADKMN FADIEKTING LAKKATEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.