Factsheet for VIT_11s0016g01870.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g01800.t01	mitochondrion, mitochondrion, mitochondrion
VIT_11s0016g01870.t01	mitochondrion, mitochondrion, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54220.1	VIT_09s0002g01800.t01	AT1G54220.1	24846799
AT1G54220.1	VIT_11s0016g01870.t01	AT1G54220.1	24846799
AT1G54220.1	VIT_09s0002g01800.t01	AT3G13930.1	24846799
AT1G54220.1	VIT_11s0016g01870.t01	AT3G13930.1	24846799
AT3G13930.1	VIT_09s0002g01800.t01	AT3G13930.1	24846799
AT3G13930.1	VIT_11s0016g01870.t01	AT3G13930.1	24846799

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g01800.t01	Wine grape	mitochondrion	72.58	71.53
Solyc07g006790.2.1	Tomato	plastid	70.02	69.26
Bra027386.1-P	Field mustard	mitochondrion	62.89	68.8
PGSC0003DMT400048225	Potato	mitochondrion	69.1	68.48
AT3G13930.1	Thale cress	mitochondrion	66.73	67.72
Bra001531.1-P	Field mustard	mitochondrion, plastid	57.59	67.6
Bra037976.1-P	Field mustard	mitochondrion	66.18	66.91
CDY55206	Canola	mitochondrion	62.52	66.8
CDX82504	Canola	plastid	65.08	66.17
CDX97529	Canola	mitochondrion	67.82	66.01
AT1G54220.1	Thale cress	mitochondrion	64.9	65.86
CDY33075	Canola	mitochondrion, plastid	66.73	65.77
CDX75740	Canola	mitochondrion, plastid	66.54	64.88
CDY24058	Canola	mitochondrion	65.81	64.86
EES04754	Sorghum	mitochondrion	63.25	64.19
TraesCS6B01G028600.1	Wheat	mitochondrion	61.97	63.72
HORVU6Hr1G003770.1	Barley	cytosol, mitochondrion	62.16	63.67
TraesCS6D01G024400.1	Wheat	golgi, mitochondrion	62.89	63.47
Os06t0105400-02	Rice	mitochondrion	63.25	62.91
TraesCS6A01G022600.2	Wheat	golgi	61.61	62.64
TraesCS7A01G014600.4	Wheat	golgi, mitochondrion	61.79	62.48
TraesCS7D01G011600.1	Wheat	golgi, mitochondrion	61.79	62.48
Os07t0410100-01	Rice	mitochondrion	61.79	62.48
TraesCS4A01G481800.3	Wheat	mitochondrion, unclear	61.43	62.34
Zm00001d053580_P002	Maize	mitochondrion	62.52	62.07
Os02t0105200-01	Rice	mitochondrion	62.16	62.04
HORVU7Hr1G001330.9	Barley	plastid	61.43	58.23
Zm00001d016365_P002	Maize	mitochondrion	63.25	56.08
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	63.62	54.8
VIT_01s0011g03380.t01	Wine grape	plastid	29.07	32.58
VIT_13s0074g00150.t01	Wine grape	mitochondrion	37.11	31.92
VIT_18s0072g01000.t01	Wine grape	plastid	27.79	31.87
VIT_19s0090g00750.t01	Wine grape	cytosol	20.29	28.32
VIT_10s0116g01480.t01	Wine grape	mitochondrion	23.03	26.64
VIT_05s0077g02080.t01	Wine grape	cytosol	21.02	24.84

Protein Annotations

KEGG:00010+2.3.1.12	KEGG:00020+2.3.1.12	KEGG:00620+2.3.1.12	EntrezGene:100249200	wikigene:100249200	InterPro:2-oxoA_DH_lipoyl-BS
InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	InterPro:Biotin_lipoyl
InterPro:CAT-like_dom_sf	ProteinID:CBI27880	ProteinID:CBI27880.3	ncoils:Coil	UniProt:D7TCM2	InterPro:E3-bd_dom_sf
EMBL:FN595756	GO:GO:0003674	GO:GO:0003824	GO:GO:0004742	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006090	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045254	InterPro:IPR000089
InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	InterPro:LAT1	EntrezGene:LOC100249200	wikigene:LOC100249200
PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826
InterPro:PSBD	PANTHER:PTHR43178	PANTHER:PTHR43178:SF1	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777
InterPro:Single_hybrid_motif	TIGR:TC61894	TIGR:TC65323	TIGRFAMs:TIGR01349	UniParc:UPI0001BE2EEB	ArrayExpress:VIT_11s0016g01870
EnsemblPlantsGene:VIT_11s0016g01870	EnsemblPlants:VIT_11s0016g01870.t01	RefSeq:XP_002279314	RefSeq:XP_002279314.2	RefSeq:XP_010656170.1	SEG:seg

Description

Acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:D7TCM2]

Coordinates

chr11:-:1510896..1516719

Molecular Weight (calculated)

59243.0 Da

IEP (calculated)

8.250

GRAVY (calculated)

-0.282

Length

547 amino acids

Sequence
(BLAST)

001: MLYASRFLTH SRKIRNASNV LRSEPAILVR WFSGGTCSSI GKGDDLIEIR RRGFNSSTDG LLSGVNRAVD PNIYIVGWVR GFNGNISRMA KTMGIPVVGS
101: ISNKSLQMHL IRGFATDAGL PPHQEIGMPS LSPTMTEGNI ARWLKKEGDK ISPGEVLCEV ETDKATVEME CMEEGYLAKI VLGDGAKEIK VGQVIAITVE
201: EEDDIAKFKG YEAPKGGAAD GGKKSSASPP PMKEVAEKPA SSPQPNVSKA VESSKAGDRI FSSPLAKKLA EDHNVPLQSI KGTGPDGRIV KADIEDYLAS
301: YGKEATTPFS EAATLDYTDL PHTQIRKVTA SRLLLSKQTI PHYYLTVDTC VDKLMELRSQ LNTLQEASGG KRISVNDLVI KAAALALRKV PQCNSSWTND
401: YIRQYHNVNI NVAVQTDNGL YVPVVRDADK KGLSKIAEEI KHLAQKAKDN SLKSEDYEGG TFTVSNLGGP FGVKQFCAII NPPQSGILAV GSAEKRVIPG
501: VGPDQFKYAS FMPVTLSCDH RVIDGAIGAE WLKAFKGYIE NPESMLL

Best Arabidopsis Sequence Match ( AT1G54220.2 )
(BLAST)

001: MAYASRIINH SKKLKDVSTL LRRENAATIR YYSNTNRAPL NREDTFNSRL GYPPLERISI CSTSTLPVSI IFSTTRSNLS SAMGRPIFGK EFSCLMQSAR
101: GFSSGSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGYLAKIVK AEGSKEIQVG EVIAITVEDE EDIGKFKDYT
201: PSSTADAAPT KAEPTPAPPK EEKVKQPSSP PEPKASKPST PPTGDRVFAS PLARKLAEDN NVPLSDIEGT GPEGRIVKAD IDEYLASSGK GATAKPSKST
301: DSKAPALDYV DIPHSQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKLMALR SQLNSFKEAS GGKRISVNDL VVKAAALALR KVPQCNSSWT DDYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DRKGLSTIGE EVRLLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VVNPPQAAIL AVGSAEKRVV PGNGPDQFNF
501: ASYMPVTLSC DHRVVDGAIG AEWLKAFKGY IENPKSMLL

Arabidopsis Description

Acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.