CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04754	mitochondrion, mitochondrion, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54220.1	EES04754	AT1G54220.1	24846799
AT1G54220.1	EES04754	AT3G13930.1	24846799
AT3G13930.1	EES04754	AT3G13930.1	24846799

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053580_P002	Maize	mitochondrion	94.99	92.92
TraesCS6D01G024400.1	Wheat	golgi, mitochondrion	85.71	85.24
TraesCS6B01G028600.1	Wheat	mitochondrion	83.3	84.4
TraesCS6A01G022600.2	Wheat	golgi	83.67	83.83
HORVU6Hr1G003770.1	Barley	cytosol, mitochondrion	82.93	83.71
Os07t0410100-01	Rice	mitochondrion	83.3	82.99
Zm00001d016365_P002	Maize	mitochondrion	94.62	82.66
Os02t0105200-01	Rice	mitochondrion	82.56	81.2
AT3G13930.1	Thale cress	mitochondrion	64.01	64.01
Solyc07g006790.2.1	Tomato	plastid	64.94	63.29
VIT_11s0016g01870.t01	Wine grape	mitochondrion	64.19	63.25
Bra001531.1-P	Field mustard	mitochondrion, plastid	54.55	63.09
PGSC0003DMT400048225	Potato	mitochondrion	64.56	63.04
KRH47526	Soybean	mitochondrion	63.64	62.71
KRH06095	Soybean	mitochondrion	63.45	62.52
VIT_09s0002g01800.t01	Wine grape	mitochondrion	64.19	62.34
Bra037976.1-P	Field mustard	mitochondrion	62.52	62.29
Bra027386.1-P	Field mustard	mitochondrion	57.7	62.2
AT1G54220.1	Thale cress	mitochondrion	61.78	61.78
CDX82504	Canola	plastid	61.6	61.71
CDY55206	Canola	mitochondrion	58.07	61.13
CDY33075	Canola	mitochondrion, plastid	62.89	61.08
CDY24058	Canola	mitochondrion	62.52	60.72
CDX97529	Canola	mitochondrion	62.89	60.32
CDX75740	Canola	mitochondrion, plastid	62.52	60.07
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	65.86	55.91
KXG37311	Sorghum	mitochondrion	35.25	39.26
OQU78843	Sorghum	plastid	25.97	30.57
EES15031	Sorghum	plastid	26.53	30.11
OQU89472	Sorghum	plastid	25.05	29.41
OQU93042	Sorghum	mitochondrion	23.38	26.98
EES02874	Sorghum	mitochondrion	22.45	23.14

Protein Annotations

KEGG:00010+2.3.1.12	KEGG:00020+2.3.1.12	KEGG:00620+2.3.1.12	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	EntrezGene:8085529	InterPro:Biotin_lipoyl	UniProt:C5XY37
InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	EnsemblPlants:EES04754	ProteinID:EES04754	ProteinID:EES04754.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004742	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0006090	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016746	GO:GO:0045254	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213
InterPro:IPR036625	InterPro:LAT1	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189
PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR43178	PANTHER:PTHR43178:SF4	EnsemblPlantsGene:SORBI_3004G093600
SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	unigene:Sbi.15214	InterPro:Single_hybrid_motif	TIGRFAMs:TIGR01349
UniParc:UPI0001A858A3	RefSeq:XP_002451778.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:8012203..8019449

Molecular Weight (calculated)

58049.1 Da

IEP (calculated)

8.199

GRAVY (calculated)

-0.363

Length

539 amino acids

Sequence
(BLAST)

001: MSAAHLLRHS RKLRSLQNAV GCENFSLVRH FSSGSGSVIA KENGVGKRTR GTRFSQHNQP AKELETFSLG VNGSCTWRRA SNSLTPSAAS RLNGSFSCGQ
101: VVSARPFSSS ADLPPHQEIG MPSLSPTMTE GNIAKWLKKE GDKVSPGEVL CEVETDKATV EMECMEEGYL AKIVQGDGAK EIKVGEVIAI TVEEEGDIEK
201: FKDYKPSSSA EPVAPAESKA QPEPSQPKVE EKKLTQAPEA KAPKIEDASQ SGDRIFASPL ARKLAEDNNV PLSSVKGTGP DGRILKADIE DYLAKGGTRE
301: AFAAPGLGYI DIPNAQIRKV TANRLLQSKQ TIPHYYLTVD ARVDKLVKLR GELNPLQDAA GGKKISINDL VIKAAALALR KVPQCNSSWM NDFIRQYHNV
401: NINVAVQTEH GLFVPVIRDA DKKGLGTIAE EVKQLAQKAR DNSLKPADYE GGTFTVSNLG GPFGIKQFCA IINPPQSAIL AIGSAEKRVI PGSADGQYEF
501: GSFMSATLSC DHRVIDGAIG AEFLKAFKGY IENPTSMLL

Best Arabidopsis Sequence Match ( AT3G13930.1 )
(BLAST)

001: MASRIINHSK KLKHVSALLR RDHAVAVRCF SNSTHPSLVG REDIFKARLN YSSVERISKC GTGNVTMLSG ISTTSTKLSS PMAGPKLFKE FISSQMRSVR
101: GFSSSSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGFLAKIVK EEGAKEIQVG EVIAITVEDE DDIQKFKDYT
201: PSSDTGPAAP EAKPAPSLPK EEKVEKPASA PEAKISKPSS APSEDRIFAS PLARKLAEDN NVPLSSIKGT GPEGRIVKAD VEDFLASGSK ETTAKPSKQV
301: DSKVPALDYV DIPHTQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKMMGLR SQLNSFQEAS GGKRISVNDL VIKAAALALR KVPQCNSSWT DEYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DKKGLSTIGE EVRFLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VINPPQAAIL AIGSAEKRVV PGTGPDQYNV
501: ASYMSVTLSC DHRVIDGAIG AEWLKAFKGY IETPESMLL

Arabidopsis Description

Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.