CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06095	mitochondrion, mitochondrion, mitochondrion
KRH47526	mitochondrion, mitochondrion, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54220.1	KRH06095	AT1G54220.1	24846799
AT1G54220.1	KRH47526	AT1G54220.1	24846799
AT1G54220.1	KRH06095	AT3G13930.1	24846799
AT1G54220.1	KRH47526	AT3G13930.1	24846799
AT3G13930.1	KRH06095	AT3G13930.1	24846799
AT3G13930.1	KRH47526	AT3G13930.1	24846799

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47526	Soybean	mitochondrion	94.88	94.88
VIT_09s0002g01800.t01	Wine grape	mitochondrion	71.12	70.09
Solyc07g006790.2.1	Tomato	plastid	69.65	68.9
PGSC0003DMT400048225	Potato	mitochondrion	69.29	68.66
AT3G13930.1	Thale cress	mitochondrion	67.64	68.65
Bra027386.1-P	Field mustard	mitochondrion	62.34	68.2
Bra037976.1-P	Field mustard	mitochondrion	66.54	67.28
CDY33075	Canola	mitochondrion, plastid	68.01	67.03
Bra001531.1-P	Field mustard	mitochondrion, plastid	56.67	66.52
AT1G54220.1	Thale cress	mitochondrion	65.45	66.42
CDY24058	Canola	mitochondrion	66.73	65.77
CDY55206	Canola	mitochondrion	61.43	65.62
CDX82504	Canola	plastid	64.53	65.61
CDX97529	Canola	mitochondrion	66.73	64.95
TraesCS6B01G028600.1	Wheat	mitochondrion	62.71	64.47
HORVU6Hr1G003770.1	Barley	cytosol, mitochondrion	62.89	64.42
TraesCS6D01G024400.1	Wheat	golgi, mitochondrion	63.8	64.39
TraesCS6A01G022600.2	Wheat	golgi	63.07	64.13
CDX75740	Canola	mitochondrion, plastid	65.63	63.99
Os06t0105400-02	Rice	mitochondrion	63.8	63.45
EES04754	Sorghum	mitochondrion	62.52	63.45
Os07t0410100-01	Rice	mitochondrion	62.34	63.03
Os02t0105200-01	Rice	mitochondrion	62.34	62.23
TraesCS7D01G011600.1	Wheat	golgi, mitochondrion	61.06	61.74
TraesCS4A01G481800.3	Wheat	mitochondrion, unclear	60.51	61.41
TraesCS7A01G014600.4	Wheat	golgi, mitochondrion	60.69	61.37
Zm00001d053580_P002	Maize	mitochondrion	61.79	61.34
HORVU7Hr1G001330.9	Barley	plastid	61.06	57.89
Zm00001d016365_P002	Maize	mitochondrion	63.62	56.4
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	63.62	54.8
KRG92074	Soybean	cytosol, mitochondrion	9.69	48.18
KRH34962	Soybean	plastid	28.52	33.26
KRG91819	Soybean	endoplasmic reticulum, nucleus	27.79	32.69
KRH75381	Soybean	plastid	24.13	30.91
KRH34708	Soybean	mitochondrion	36.75	29.73
KRG92075	Soybean	mitochondrion	27.24	28.76
KRG90801	Soybean	endoplasmic reticulum, nucleus	26.33	28.46
KRH73773	Soybean	mitochondrion	21.21	25.0
KRH14369	Soybean	nucleus	21.21	25.0
KRH02272	Soybean	mitochondrion	20.48	21.75
KRH50815	Soybean	mitochondrion	19.74	20.97

Protein Annotations

KEGG:00010+2.3.1.12	KEGG:00020+2.3.1.12	KEGG:00620+2.3.1.12	EntrezGene:100778218	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase
MapMan:2.2.1.2	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	EMBL:ACUP02009815	InterPro:Biotin_lipoyl
InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	EnsemblPlantsGene:GLYMA_16G004400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004742
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759
GO:GO:0006090	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746
GO:GO:0045254	UniProt:I1MJX0	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625
EnsemblPlants:KRH06095	ProteinID:KRH06095	ProteinID:KRH06095.1	InterPro:LAT1	PFAM:PF00198	PFAM:PF00364
PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR43178
PANTHER:PTHR43178:SF1	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	TIGRFAMs:TIGR01349
UniParc:UPI0001CAB749	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:247327..254522

Molecular Weight (calculated)

59612.0 Da

IEP (calculated)

7.794

GRAVY (calculated)

-0.366

Length

547 amino acids

Sequence
(BLAST)

001: MASHLLNHSS KMRNASKLLH HERALLVRWF SGDAHSSLNR NRDVWKTQFH ESSARSSVFE PASCFNKHSF GMQKRNIFMA TIKRGSIIGS EFNGEISRSL
101: QVLSRRCYAS ASDLPPHQEI GMPSLSPTMT EGNIARWLKK EGDRISPGEV LCEVETDKAT VEMECMEEGF LAKIIRGDGA KEIKVGEVIA VTVEDEGDIA
201: KFKDYQPSAS EPSEPPAKET SAPPPPKKEE VVEEPAREPE PKVSKPSAPP SSGDRTFASP LARKLAEEKN VPLSSIKGTG PEGLIVKADI DDYLASGAKE
301: VSASSKAKVA ADAALDYTDI PVSQIRKVTA SRLLLSKQTI PHYYLTVDTC VDKLMSLRTQ LNSLQEASGG SRISVNDLVI KAAALALRKV PQCNSSWAND
401: YIRQYHNVNI NVAVQTDNGL FVPVVRDADK KGLSKIGEEV KQLAKKAKEN SLKPQEYEGG TFTVTNLGGP FGVKQFCAII NPPQAGILAV GSAERRVVPG
501: SGAEEFKFAS FMSVTLSCDH RVIDGAIGAE WLKAFKGYIE NPETMLL

Best Arabidopsis Sequence Match ( AT1G54220.2 )
(BLAST)

001: MAYASRIINH SKKLKDVSTL LRRENAATIR YYSNTNRAPL NREDTFNSRL GYPPLERISI CSTSTLPVSI IFSTTRSNLS SAMGRPIFGK EFSCLMQSAR
101: GFSSGSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGYLAKIVK AEGSKEIQVG EVIAITVEDE EDIGKFKDYT
201: PSSTADAAPT KAEPTPAPPK EEKVKQPSSP PEPKASKPST PPTGDRVFAS PLARKLAEDN NVPLSDIEGT GPEGRIVKAD IDEYLASSGK GATAKPSKST
301: DSKAPALDYV DIPHSQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKLMALR SQLNSFKEAS GGKRISVNDL VVKAAALALR KVPQCNSSWT DDYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DRKGLSTIGE EVRLLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VVNPPQAAIL AVGSAEKRVV PGNGPDQFNF
501: ASYMPVTLSC DHRVVDGAIG AEWLKAFKGY IENPKSMLL

Arabidopsis Description

Acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.