CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH56614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	KRG93305	AT3G27960.1	21798944
AT4G26910.1	KRH56614	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73773	Soybean	mitochondrion	96.12	96.12
Solyc12g005080.1.1	Tomato	nucleus	61.64	77.3
Bra035551.1-P	Field mustard	mitochondrion	66.81	71.26
VIT_10s0116g01480.t01	Wine grape	mitochondrion	72.2	70.82
Solyc07g064800.2.1	Tomato	extracellular, nucleus	71.34	70.73
VIT_19s0090g00750.t01	Wine grape	cytosol	59.48	70.41
PGSC0003DMT400057449	Potato	mitochondrion	70.69	70.09
PGSC0003DMT400071652	Potato	mitochondrion	70.69	69.64
Os04t0394200-01	Rice	mitochondrion	65.95	69.55
GSMUA_AchrUn_...	Banana	mitochondrion	67.24	69.03
Bra002934.1-P	Field mustard	mitochondrion	69.18	68.88
CDY17300	Canola	mitochondrion	69.18	68.88
GSMUA_Achr3P18670_001	Banana	mitochondrion	67.03	68.81
AT5G55070.1	Thale cress	mitochondrion	68.75	68.75
CDY19918	Canola	mitochondrion	68.75	68.75
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	64.87	68.72
CDY20790	Canola	mitochondrion	68.75	68.6
TraesCS4B01G071300.1	Wheat	mitochondrion	64.66	68.49
TraesCS4D01G070200.1	Wheat	mitochondrion	64.66	68.49
CDY06613	Canola	mitochondrion	68.75	68.45
Os02t0514700-00	Rice	mitochondrion	58.62	68.34
TraesCS2D01G039500.2	Wheat	mitochondrion	65.52	68.31
Zm00001d025258_P009	Maize	mitochondrion	65.52	68.16
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	65.3	68.09
TraesCS2B01G053600.1	Wheat	mitochondrion	62.28	67.68
AT4G26910.1	Thale cress	mitochondrion	66.81	66.81
GSMUA_Achr9P01190_001	Banana	cytosol	69.83	65.19
Zm00001d003923_P002	Maize	mitochondrion	66.38	65.12
CDY21016	Canola	mitochondrion, plastid	66.38	64.71
Bra016809.1-P	Field mustard	mitochondrion, plastid	66.16	64.63
OQU93042	Sorghum	mitochondrion	64.87	64.45
Bra028992.1-P	Field mustard	mitochondrion	68.32	64.17
CDY31217	Canola	mitochondrion, plastid	66.38	64.03
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	64.87	63.24
CDY12012	Canola	plastid	67.89	60.34
CDY36727	Canola	plastid	68.75	59.63
KRG92074	Soybean	cytosol, mitochondrion	7.54	31.82
KRH06095	Soybean	mitochondrion	25.0	21.21
KRH47526	Soybean	mitochondrion	24.57	20.84
KRG91819	Soybean	endoplasmic reticulum, nucleus	19.4	19.35
KRH34962	Soybean	plastid	19.18	18.98
KRG90801	Soybean	endoplasmic reticulum, nucleus	20.26	18.58
KRH75381	Soybean	plastid	16.81	18.27
KRH50815	Soybean	mitochondrion	20.04	18.06
KRH34708	Soybean	mitochondrion	26.29	18.05
KRH02272	Soybean	mitochondrion	19.61	17.67
Os01t0314100-01	Rice	mitochondrion	19.83	17.59
KRG92075	Soybean	mitochondrion	18.97	16.99
Os01t0314000-01	Rice	cytosol	0.86	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	EntrezGene:100813488	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	EMBL:ACUP02008500	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	ncoils:Coil
EnsemblPlantsGene:GLYMA_14G022100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252	UniProt:I1M6P8	InterPro:IPR000089
InterPro:IPR023213	EnsemblPlants:KRH14369	ProteinID:KRH14369	ProteinID:KRH14369.1	PFAM:PF00198	PFAM:PF00364
ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	MetaCyc:PWY-5084	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347	UniParc:UPI00023D4361	SEG:seg

Description

hypothetical protein

Coordinates

chr14:-:1555989..1560875

Molecular Weight (calculated)

50222.6 Da

IEP (calculated)

9.741

GRAVY (calculated)

-0.158

Length

464 amino acids

Sequence
(BLAST)

001: MFGVVRRRVA SGSPSPWLLG QSVQNIRSGP SVSARASSIA VKEIAFPSGG CGFVRNFSHI TLGSWINSKP MRVVIHPEAT VQTLGRLFSS ESGDTVDVVV
101: PPLAESISDG TLAQFLKRPG DRVNADEPIA QIETDKVTID VSSPESGVIL KLLANEGDTV EPGNKIAIIS RSADATHVAP SETTSEKGAP QPTQKVSEEK
201: KAPKVETAPA KEKPKAPPAI LKSPTEPQLP PKERERRVPM TRLRKRVATR LKDSQNTFAM LTTFNEVDMT NLMKLRSDYK DAFVEKHGVK LGLMSGFVKA
301: AVNALQHQPI VNAVIDGDDI IYRDYIDISI AVGTSKGLVV PVIRNADTMN FADIEKQINA FAKKANDGTL SIDEMAGGTL TISNGGVYGS LLSTPIINPP
401: QSAILGMHSI VSRPTVVGGN IVPRPLMYVA LTYDHRIIDG REAVFFLRRI KDIVEDPRRL LLDI

Best Arabidopsis Sequence Match ( AT4G26910.1 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PAGNSGISRS ASLVSSTLQR WVRPFSAETG DTVEAVVPHM
101: GESITDGTLA TFLKKPGERV QADEAIAQIE TDKVTIDIAS PASGVIQEFL VNEGDTVEPG TKVAIISKSE DTASQVTPSQ KIPETTDTKP SPPAEDKQKP
201: RVESAPVAEK PKAPSSPPPP KQSAKEPQLP PKERERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFYEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRGADKMN FAEIEKTINS LAKKANEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VSRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRV KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.