Factsheet for Zm00001d003923_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017793_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT4G26910.1	Zm00001d051589_P001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025258_P009	Maize	mitochondrion	89.64	95.07
Os04t0394200-01	Rice	mitochondrion	82.66	88.86
TraesCS2B01G053600.1	Wheat	mitochondrion	79.7	88.29
TraesCS2D01G039500.2	Wheat	mitochondrion	82.88	88.09
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	82.66	87.87
OQU93042	Sorghum	mitochondrion	86.47	87.58
Solyc12g005080.1.1	Tomato	nucleus	59.2	75.68
VIT_19s0090g00750.t01	Wine grape	cytosol	57.08	68.88
Bra035551.1-P	Field mustard	mitochondrion	61.73	67.13
KRH14369	Soybean	nucleus	65.12	66.38
KRH73773	Soybean	mitochondrion	64.69	65.95
PGSC0003DMT400071652	Potato	mitochondrion	65.12	65.39
VIT_10s0116g01480.t01	Wine grape	mitochondrion	65.12	65.12
Solyc07g064800.2.1	Tomato	extracellular, nucleus	64.27	64.96
CDY17300	Canola	mitochondrion	63.85	64.81
CDY06613	Canola	mitochondrion	63.85	64.81
Bra002934.1-P	Field mustard	mitochondrion	63.85	64.81
CDY19918	Canola	mitochondrion	63.42	64.66
AT5G55070.1	Thale cress	mitochondrion	63.42	64.66
PGSC0003DMT400057449	Potato	mitochondrion	63.85	64.53
CDY20790	Canola	mitochondrion	63.42	64.52
AT4G26910.1	Thale cress	mitochondrion	61.31	62.5
Bra028992.1-P	Field mustard	mitochondrion	63.0	60.32
CDY21016	Canola	mitochondrion, plastid	59.62	59.24
Bra016809.1-P	Field mustard	mitochondrion, plastid	59.41	59.16
CDY31217	Canola	mitochondrion, plastid	60.04	59.04
CDY12012	Canola	plastid	63.42	57.47
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	12.05	56.44
CDY36727	Canola	plastid	63.42	56.07
Zm00001d034531_P001	Maize	mitochondrion	26.43	25.36
Zm00001d053580_P002	Maize	mitochondrion	26.64	22.87
Zm00001d016365_P002	Maize	mitochondrion	27.27	20.91
Zm00001d020426_P001	Maize	plastid	19.45	20.26
Zm00001d023606_P005	Maize	plastid	19.03	19.69
Zm00001d032224_P001	Maize	plastid	18.6	18.68
Zm00001d050383_P001	Maize	plastid	18.82	17.05
Zm00001d040670_P004	Maize	mitochondrion	18.39	16.63
Zm00001d041839_P001	Maize	plastid	18.82	15.01

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	EntrezGene:100284269	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	UniProt:A0A1D6ECC8	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004149	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016746	GO:GO:0045252	InterPro:IPR000089	InterPro:IPR023213	ProteinID:ONM17973.1	PFAM:PF00198
PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347	UniParc:UPI0008436F19	EnsemblPlantsGene:Zm00001d003923
EnsemblPlants:Zm00001d003923_P002	EnsemblPlants:Zm00001d003923_T002	SEG:seg	:	:	:

Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Coordinates

chr2:-:68465595..68483377

Molecular Weight (calculated)

51745.3 Da

IEP (calculated)

8.418

GRAVY (calculated)

-0.184

Length

473 amino acids

Sequence
(BLAST)

001: MASRVASGLL RRRAVATLGL LRSHTHVRNY SSQLSALIPA TSQCSNLTRR RYYLPNPSLY QVWSRSFASD SGDKFEAVVP FMGESVTDGT LANFLKSMLS
101: LSLSLSLSLS LSPPCDNIFF FYTEPGDRVE ADEPIAQIET DKVTIDVASP EAGVIEKLIA SEGDTVTPGT KVAIISKSAQ PAETHVAPSE EATSKGSSPP
201: KVEEKSRVEE KAPKVEPPKM QAPKPTAPLK TSPSEPQLPP KERERRVPMP RLRKRIANRL KDSQNTFAML STFNEVDMTN LMKLRSDYKD EFVTKHGVKL
301: GLMSCFVKAA VSALQNQPIV NAVIDGDDII YRDYVDVSVA VGTSKGLVVP VIRDADTMNF ADIEKGINNL AKKANEGALS IDDMAGGTFT ISNGGVYGSL
401: LSTPIINPPQ SSILGMHSIV QRPVVVNGDI LARPMMFLAL TYDHRLIDGR EAVFFLRRIK DVVEDPRRLL LDI

Best Arabidopsis Sequence Match ( AT5G55070.1 )
(BLAST)

001: MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC PGCPDCSRTI INGYQGTALQ RWVRPFSSDS GDVVEAVVPH
101: MGESITDGTL AAFLKKPGDR VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS EKAPEKPAPK PSPPAEKPKV
201: ESTKVAEKPK APSPPPPPPS KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFLEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRDADKMN FADIEKTING LAKKATEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.