Factsheet for Zm00001d050383_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d023606_P005
Zm00001d039354_P001
Zm00001d041839_P001
Zm00001d049623_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT3G25860.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT3G25860.1	Zm00001d049623_P002	AT1G79070.1	21798944
AT3G25860.1	Zm00001d039354_P001	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15031	Sorghum	plastid	86.02	94.53
Zm00001d032224_P001	Maize	plastid	84.87	94.06
Os08t0431300-01	Rice	plastid	77.01	84.63
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	74.52	82.07
TraesCS5A01G476700.1	Wheat	plastid	74.33	81.86
TraesCS5B01G489600.1	Wheat	golgi	74.33	81.68
GSMUA_Achr3P07350_001	Banana	cytosol	60.73	77.89
Zm00001d020426_P001	Maize	plastid	63.79	73.35
HORVU5Hr1G112850.3	Barley	plastid	74.9	72.95
Solyc05g009530.2.1	Tomato	plastid	60.15	68.41
VIT_01s0011g03380.t01	Wine grape	plastid	63.6	68.03
Zm00001d023606_P005	Maize	plastid	59.39	67.83
PGSC0003DMT400033754	Potato	plastid	59.39	67.39
CDX83563	Canola	plastid	60.54	66.39
KRH75381	Soybean	plastid	53.83	65.81
CDY13593	Canola	plastid	59.96	65.62
Bra025167.1-P	Field mustard	plastid	59.96	65.62
CDY39183	Canola	plastid	58.81	65.04
AT3G25860.1	Thale cress	plastid	59.77	65.0
Bra017345.1-P	Field mustard	plastid	59.39	64.72
CDY04184	Canola	plastid	59.39	64.72
KRG90801	Soybean	endoplasmic reticulum, nucleus	61.69	63.64
Zm00001d041839_P001	Maize	plastid	60.34	53.12
Zm00001d053580_P002	Maize	mitochondrion	27.39	25.95
Zm00001d034531_P001	Maize	mitochondrion	22.99	24.34
Zm00001d016365_P002	Maize	mitochondrion	27.97	23.66
Zm00001d040670_P004	Maize	mitochondrion	20.88	20.84
Zm00001d025258_P009	Maize	mitochondrion	17.24	20.18
Zm00001d003923_P002	Maize	mitochondrion	17.05	18.82

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
UniProt:A0A1D6Q1G1	ProteinID:AQK52452.1	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089
InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817
ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF67
SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI00084532C0	EnsemblPlantsGene:Zm00001d050383
EnsemblPlants:Zm00001d050383_P001	EnsemblPlants:Zm00001d050383_T001	SEG:seg	:	:	:

Description

Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex chloroplastic

Coordinates

chr4:-:85015212..85019176

Molecular Weight (calculated)

54425.8 Da

IEP (calculated)

9.174

GRAVY (calculated)

0.052

Length

522 amino acids

Sequence
(BLAST)

001: MTASSEFPKP SSPRFLRPSS LVCIPIYPTR TSQKPTLLLA SASDIEHSSS MATAPAPLSL SASTLPARLR AGVVPAGTRW RQPRRGRMVV RAKIREIFMP
101: ALSSTMTEGK IVSWSAGEGD RVSKGDAVVV VESDKADMDV ETFHDGIVAV VLVQAGESAP VGAPIALLAE SEEEVPLALA KAQELSNGQP QQAPPAPTED
201: AAAAPPPLPA ATTAPAPVAA GTKGITSPHA KKLAKQHRVD LAKITGTGPY GRITPADIEA AAGIKPKSEP TPAAAAAPPP VAAPSVGAVP QAAVLPPVPG
301: ATVVPFTTMQ AAVSKNMVES LAVPAFRVGY PIVTDKLDEL YEKVKPKGVT MTVLLAKAAA MALAQHPVVN STCRDGKSFT YNSNINIAVA VAIDGGLITP
401: VLQDADKLDI YLLSQNWKDL VKKARAKQLQ PNDYNSGTFT LSNLGMFGVD RFDAILPPGQ GAIMAVGASK PTVVADKDGF FSVKSKMLVN VTADHRIVYG
501: ADLAAFLQTF AKIIEDPESL TL

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.