Factsheet for Zm00001d049623_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
cytoskeleton 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012311_P001
Zm00001d039157_P001
Zm00001d044665_P001
Zm00001d048834_P001
Zm00001d049623_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79070.1	Zm00001d012311_P001	AT1G12840.1	21798944
AT1G79070.1	Zm00001d039157_P001	AT1G12840.1	21798944
AT1G79070.1	Zm00001d044665_P001	AT1G12840.1	21798944
AT1G79070.1	Zm00001d049623_P002	AT1G79070.1	21798944
AT1G79070.1	Zm00001d048834_P001	AT3G13940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G210500.1	Wheat	cytosol	52.35	56.69
KXG24345	Sorghum	nucleus	64.12	56.48
TraesCS7A01G310700.1	Wheat	cytosol	51.18	55.41
TraesCS7D01G307200.1	Wheat	cytosol	51.18	55.41
Os08t0129900-00	Rice	cytosol, nucleus, plastid	48.82	50.3
GSMUA_Achr11P...	Banana	cytosol	38.24	46.1
GSMUA_Achr8P07100_001	Banana	cytosol	36.47	45.59
Solyc07g066370.2.1	Tomato	cytosol	31.76	36.24
PGSC0003DMT400056908	Potato	nucleus	31.76	35.29
CDX88503	Canola	nucleus	26.47	32.61
VIT_19s0027g00470.t01	Wine grape	cytosol	27.06	31.94
AT1G79070.1	Thale cress	nucleus	25.88	31.88
Bra035089.1-P	Field mustard	cytosol	25.88	31.88
CDX87410	Canola	cytosol	25.88	31.88
KRH13655	Soybean	nucleus	27.06	29.68
KRH43808	Soybean	nucleus	30.0	27.27

Protein Annotations

EntrezGene:100277481	Gene3D:3.90.20.10	MapMan:35.2	UniProt:A0A1D6PWL0	ProteinID:AQK50933.1	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0031083	PFAM:PF14712	PANTHER:PTHR31305	InterPro:Snapin
InterPro:Snapin/Pallidin/Snn1	UniParc:UPI0008424FD4	EnsemblPlantsGene:Zm00001d049623	EnsemblPlants:Zm00001d049623_P002	EnsemblPlants:Zm00001d049623_T002	SEG:seg

Description

SNARE-associated protein-related

Coordinates

chr4:+:37967767..37970066

Molecular Weight (calculated)

18263.4 Da

IEP (calculated)

4.879

GRAVY (calculated)

-0.346

Length

170 amino acids

Sequence
(BLAST)

001: MDGADIPSHS AADGDRPPEN ADDGGVEDER AAAPPPERCG ALASAIAGVL AGALREHEER AAATARSQDE VAAAIDRLNG ELDRLLENAP TMVIMHHSAR
101: ISSIRKRISA MNMLLKSIQR RIDSMDRIIS TDHSSPVQKA GNEVGTSYGF QYHEVSGGEV SFSWALVLWF

Best Arabidopsis Sequence Match ( AT1G79070.1 )
(BLAST)

001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT

Arabidopsis Description

SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.