Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006250 | |
| PGSC0003DMT400042035 | |
| PGSC0003DMT400056908 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79070.1 | PGSC0003DMT400056908 | AT1G79070.1 | 21798944 |
| AT1G79070.1 | PGSC0003DMT400006250 | AT3G13940.1 | 21798944 |
| AT1G79070.1 | PGSC0003DMT400042035 | AT3G13940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g066370.2.1 | Tomato | cytosol | 86.93 | 89.26 |
| GSMUA_Achr8P07100_001 | Banana | cytosol | 40.52 | 45.59 |
| VIT_19s0027g00470.t01 | Wine grape | cytosol | 41.83 | 44.44 |
| KRH13655 | Soybean | nucleus | 44.44 | 43.87 |
| CDX88503 | Canola | nucleus | 38.56 | 42.75 |
| AT1G79070.1 | Thale cress | nucleus | 37.91 | 42.03 |
| Bra035089.1-P | Field mustard | cytosol | 37.91 | 42.03 |
| CDX87410 | Canola | cytosol | 37.91 | 42.03 |
| GSMUA_Achr11P... | Banana | cytosol | 38.56 | 41.84 |
| KRH43808 | Soybean | nucleus | 45.75 | 37.43 |
| TraesCS7A01G310700.1 | Wheat | cytosol | 34.64 | 33.76 |
| TraesCS7D01G307200.1 | Wheat | cytosol | 34.64 | 33.76 |
| TraesCS7B01G210500.1 | Wheat | cytosol | 33.33 | 32.48 |
| Zm00001d049623_P002 | Maize | cytoskeleton, cytosol, nucleus | 35.29 | 31.76 |
| Os08t0129900-00 | Rice | cytosol, nucleus, plastid | 33.33 | 30.91 |
| KXG24345 | Sorghum | nucleus | 38.56 | 30.57 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400056908 | EnsemblPlantsGene:PGSC0003DMG400022130 | EntrezGene:102584377 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0031083 |
| InterPro:Snapin | InterPro:Snapin/Pallidin/Snn1 | ncoils:Coil | PANTHER:PTHR31305 | PFAM:PF14712 | PGSC:PGSC0003DMG400022130 |
| RefSeq:XP_006346049.1 | SEG:seg | UniParc:UPI0002957BB2 | UniProt:M1C021 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022130]
Coordinates
chr7:-:56435895..56439492
Molecular Weight (calculated)
16376.9 Da
IEP (calculated)
5.544
GRAVY (calculated)
-0.621
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNEAPEKPP CNTPEHDSAS TVVDGDGVND NNDTSNSALA KGLSTIISSI IREFDGSAAA TSRSQDQLSS TLDRLTGELD KLLEDAPLPF IMQHAARISG
101: VRKRITSLNS LLKSIQRRLD SIDHTLSAGL IHEQSTGDGG RDHENHKSSL KSS
101: VRKRITSLNS LLKSIQRRLD SIDHTLSAGL IHEQSTGDGG RDHENHKSSL KSS
001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
Arabidopsis Description
SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.