Factsheet for GSMUA_Achr8P07100_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr4P08830_001
GSMUA_Achr8P07100_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79070.1	GSMUA_Achr4P08830_001	AT1G12840.1	21798944
AT1G79070.1	GSMUA_AchrUn_...	AT1G12840.1	21798944
AT1G79070.1	GSMUA_Achr11P...	AT1G79070.1	21798944
AT1G79070.1	GSMUA_Achr8P07100_001	AT1G79070.1	21798944
AT1G79070.1	GSMUA_AchrUn_...	AT3G13940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	67.65	65.25
AT1G79070.1	Thale cress	nucleus	47.79	47.1
CDX88503	Canola	nucleus	47.06	46.38
KRH13655	Soybean	nucleus	52.21	45.81
Bra035089.1-P	Field mustard	cytosol	45.59	44.93
CDX87410	Canola	cytosol	45.59	44.93
VIT_19s0027g00470.t01	Wine grape	cytosol	47.06	44.44
Solyc07g066370.2.1	Tomato	cytosol	46.32	42.28
Os08t0129900-00	Rice	cytosol, nucleus, plastid	49.26	40.61
PGSC0003DMT400056908	Potato	nucleus	45.59	40.52
TraesCS7A01G310700.1	Wheat	cytosol	46.32	40.13
TraesCS7D01G307200.1	Wheat	cytosol	46.32	40.13
TraesCS7B01G210500.1	Wheat	cytosol	45.59	39.49
KRH43808	Soybean	nucleus	52.94	38.5
Zm00001d049623_P002	Maize	cytoskeleton, cytosol, nucleus	45.59	36.47
KXG24345	Sorghum	nucleus	47.06	33.16

Protein Annotations

MapMan:35.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0031083	EnsemblPlantsGene:GSMUA_Achr8G07100_001	EnsemblPlants:GSMUA_Achr8P07100_001
EnsemblPlants:GSMUA_Achr8T07100_001	UniProt:M0TNB3	PFAM:PF14712	PANTHER:PTHR31305	InterPro:Snapin	InterPro:Snapin/Pallidin/Snn1
UniParc:UPI000295E186	SEG:seg	:	:	:	:

Description

Putative SNARE-associated protein Snapin [Source:GMGC_GENE;Acc:GSMUA_Achr8G07100_001]

Coordinates

chr8:+:4637183..4639668

Molecular Weight (calculated)

14230.9 Da

IEP (calculated)

4.340

GRAVY (calculated)

-0.106

Length

136 amino acids

Sequence
(BLAST)

001: MDDGDIPATS RASSEPSASG GGGVNGAEGP AAGHEGWDAL ARAIASTLGV VMREFDSRAE GTARSQDELS LSLDRLTGEL DILLEDAPLP FIMQYAAKIS
101: SLCKRVSALN LLLKSIQRRI DNMDQMLSTG LPTGIA

Best Arabidopsis Sequence Match ( AT1G79070.1 )
(BLAST)

001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT

Arabidopsis Description

SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.