Factsheet for GSMUA_Achr4P08830_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plasma membrane 1
plastid 3
cytosol 1
vacuole 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P07200_001
GSMUA_Achr5P05820_001
GSMUA_Achr5P05830_001
GSMUA_Achr8P23160_001
GSMUA_Achr9P15480_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	GSMUA_Achr3P07200_001	AT1G77760.1	21798944
AT1G12840.1	GSMUA_Achr5P05820_001	AT1G77760.1	21798944
AT1G12840.1	GSMUA_Achr5P05830_001	AT1G77760.1	21798944
AT1G12840.1	GSMUA_Achr8P23160_001	AT1G77760.1	21798944
AT1G12840.1	GSMUA_Achr9P15480_001	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	91.37	90.31
Solyc03g097790.2.1	Tomato	plastid	74.9	63.04
VIT_14s0068g01280.t01	Wine grape	mitochondrion	80.39	54.67
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	79.22	53.87
KRG94673	Soybean	endoplasmic reticulum	78.43	53.05
AT1G12840.1	Thale cress	cytosol	76.86	52.27
Bra019792.1-P	Field mustard	cytosol	76.47	52.0
CDX98037	Canola	cytosol	76.47	52.0
KRH70055	Soybean	endoplasmic reticulum	76.47	52.0
CDY66539	Canola	cytosol	76.47	51.86
CDY21070	Canola	cytosol	76.47	51.86
KRH08399	Soybean	endoplasmic reticulum	76.08	51.73
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	76.08	51.6
CDX71966	Canola	cytosol	76.47	51.59
CDY19421	Canola	cytosol	76.08	51.46
KRH06855	Soybean	endoplasmic reticulum	76.86	51.04
CDY16036	Canola	cytosol	76.86	41.35
CDY05652	Canola	cytosol	11.76	35.29
Bra026951.1-P	Field mustard	cytosol	76.86	34.45
CDY26596	Canola	cytosol	76.86	31.92
GSMUA_AchrUn_...	Banana	cytosol	3.53	5.84
GSMUA_Achr4P08840_001	Banana	cytosol	0.78	1.49

Protein Annotations

MapMan:24.1.1.2.3	Gene3D:3.30.70.100	InterPro:ATPase_V1-cplx_csu	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0033180	EnsemblPlantsGene:GSMUA_Achr4G08830_001	EnsemblPlants:GSMUA_Achr4P08830_001	EnsemblPlants:GSMUA_Achr4T08830_001	UniProt:M0SMA0
PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	SUPFAM:SSF118203	UniParc:UPI000296E115	InterPro:Vac_ATP_synth_c_sf
SEG:seg	:	:	:	:	:

Description

V-type proton ATPase subunit C [Source:GMGC_GENE;Acc:GSMUA_Achr4G08830_001]

Coordinates

chr4:+:6444250..6447919

Molecular Weight (calculated)

28910.4 Da

IEP (calculated)

7.163

GRAVY (calculated)

-0.263

Length

255 amino acids

Sequence
(BLAST)

001: MATRYWIASL PVHTSASAHW NRLRESISKN SFDTLLYRFN TPDLRVGTLD SLLALSDDLV KSNAFIEGVT HKIRRQIEEL EKASGVEVGA LTVDGVPVDS
101: YLTRFDWDEG KYPTMSPLRE IVDSIHVQVA KIEDDMKVRA AEYSNIRSQL NAINRKQSGS LAVRDLSNLV NPEDIVASEH LVTLLAVVPK YSQKDWLSSY
201: ETLTTFVVPR SAKKLHEDNE YALYTVTLFR KVADNFRNNA REKGFQASFL LKLIC

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.